RnoALTA0000823-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86803251-86808554:-
Coord C1 exon
chr7:86808438-86808554
Coord A exon
NA
Coord C2 exon
chr7:86803251-86803427
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTATAT
5' ss Score
1.75
3' ss Seq
GTTTGTAAATTTTTCTACAGAAA
3' ss Score
7.42
Exon sequences
Seq C1 exon
CTCAGTGTGGAGGTGCAATGTCAGACTTCAGTGGTGTGATACTCAGTCCTGGATTTCCTGGAAACTACCCCAGCAGCTTAGATTGCACATGGACAATAAGGCTGCCCATCGGCTTTG
Seq A exon
NA
Seq C2 exon
AAACCATACATGATTACTTGGAAGTAAGGAGTGGATCTTCAGAACTTAGTACTGTCATTGGACGGCTTAGTGGTCCTCAAATACCATCTTCCCTGTTTAGCACAACCCATGAAACCAGCTTATATTTTCACAGCGATTATTCTCAGAACAAACAGGGATTTCATATTGTGTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-44-52,44-51-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAGCTTAGATTGCACA
R:
GGACCACTAAGCCGTCCAATG
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]