RnoALTA0000823-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86803251-86808554:-
Coord C1 exon
chr7:86808438-86808554
Coord A exon
chr7:86803428-86803460
Coord C2 exon
chr7:86803251-86803427
Length
33 bp
Sequences
Splice sites
5' ss Seq
TTGGTATAT
5' ss Score
1.75
3' ss Seq
GTTTGTTCTTCCTTCTTTAGGTG
3' ss Score
12.13
Exon sequences
Seq C1 exon
CTCAGTGTGGAGGTGCAATGTCAGACTTCAGTGGTGTGATACTCAGTCCTGGATTTCCTGGAAACTACCCCAGCAGCTTAGATTGCACATGGACAATAAGGCTGCCCATCGGCTTTG
Seq A exon
GTGTACATCTCCAGTTTGTAAATTTTTCTACAG
Seq C2 exon
AAACCATACATGATTACTTGGAAGTAAGGAGTGGATCTTCAGAACTTAGTACTGTCATTGGACGGCTTAGTGGTCCTCAAATACCATCTTCCCTGTTTAGCACAACCCATGAAACCAGCTTATATTTTCACAGCGATTATTCTCAGAACAAACAGGGATTTCATATTGTGTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-44-52,44-51-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAGCTTAGATTGCACA
R:
GGACCACTAAGCCGTCCAATG
Band lengths:
125-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]