RnoALTA0001062-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019648 | AABR07068316.1
Description
collagen type VI alpha 3 chain [Source:NCBI gene;Acc:367313]
Coordinates
chr9:97938181-97940124:-
Coord C1 exon
chr9:97939426-97940124
Coord A exon
NA
Coord C2 exon
chr9:97938181-97938283
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GATTTTTTTTCCCCCTCTAGGTG
3' ss Score
12.62
Exon sequences
Seq C1 exon
CAAGGCTTCCCAGCACTTTGCCAGGGTGGCTGTTGTGCAGCAGGCCACCTATGAGTCCGTGGACAACACCAGTGTGCCACCAGTGAAGGTGGAGTTCTCACTGACAGACTATGGTGCCAAGGAAAAGCTGCTAGACTTCCTTAGCCGGAGGATGACCCAACTTCAGGGAACCATGGACCTGGGCAATGCCATTGAATACACTATAGAGAACATCTTTGAAAGTGCTCCAAACCCACGGGACCTCAAAATTGTGGTGCTGATGCTGACCGGGGAGATACCAAGGGAGCAGCTGGAGGAGGCCCAGAGAGCCATCCTCCAGGCCAAGTGCAAGGGTTACTTCTTCGTGGTTCTGGGCATTGGCAGGAAGGTGAACGTCAAGGAGGTCTACAGTTTTGCCAGTGAGCCCAATGATGTCTTCTTCAAATTCATGGACAAATCGACTGAGCTCAACGAGGAGCCTCTGATGCGCTTTGGAAGGCTGCTCCCTTCCTTTGTCGGCA
Seq A exon
NA
Seq C2 exon
GTGGAAATGCATTTTACCTGCCTCCAGATCTCAGGAAGCAGTGTGATTGGTTCCAAGGGGACCAACCAGTGAAGAATGGCGTGAAGTTTGGTCACAGACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019648-45-44,45-43-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACTGAGCTCAACGAGGA
R:
TTCCTGAGATCTGGAGGCAGG
Band lengths:
102-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]