Special

ENSMUSG00000048126 @ mm10

Biotype
protein_coding
Gene Symbol
Col6a3
Description
collagen, type VI, alpha 3 [Source:MGI Symbol;Acc:MGI:88461]
Coordinates
chr1:90765923-90843971:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
3.8
100
0
Alternative 3'ss
221
chr1:90781908-90782128
-
96.2
100
0
Alternative 3'ss
0
NA
-
91.54
96.77
0
Alternative 3'ss
26
chr1:90777544-90777569
-
8.46
96.77
0
Alternative 3'ss
92
chr1:90767512-90767603
-
2.52
53.68
0
Alternative 3'ss
94
chr1:90767512-90767605
-
97.29
55.53
0
Exon Skipping
618
chr1:90827860-90828477
-
9.79
56.14
0
Exon Skipping
603
chr1:90821802-90822404
-
28.1
79.05
0
Exon Skipping
585
chr1:90815951-90816535
-
91.3
35.52
0
Exon Skipping
600
chr1:90813215-90813814
-
33.84
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000163359 COL6A3 1-to-1
Human hg19 ENSG00000163359 COL6A3 1-to-1
Chicken galGal4 ENSGALG00000003923 COL6A3 1-to-1
Chicken galGal3 ENSGALG00000003923 COL6A3 1-to-1
Zebrafish danRer10 ENSDARG00000077139 col6a3 1-to-1
Fruitfly dm6 FBgn0035798 frac 11-to-1