RnoALTA0001231-3/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000048644 | AC115371.1
Description
NA
Coordinates
chr15:33606124-33606684:+
Coord C1 exon
chr15:33606124-33606206
Coord A exon
chr15:33606467-33606556
Coord C2 exon
chr15:33606557-33606684
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ATTCATCACATCTGTTCCAGTTG
3' ss Score
6.45
Exon sequences
Seq C1 exon
AGCTTGTTGACCTGGGACTCGGCAATGTCCGCCCTCTCCTCTGCCTCATCCAGCTCGTGCTGCACCTTGCGGAACTTGGACAG
Seq A exon
TTGTGCCTCAGGTAGATGCCTGCTGACTGGAGGGTTTTCTGCACATCTGTGCTCATCTGTACCCCACCCATCTGTTTCTGTCTACCCAAG
Seq C2 exon
TGATGGAGAGACAACTCTGAACTCACCGCCTCTTCAGCCTGGCGCTTGTAGGCCTTCACCTTCAACTGCAGCTTGTCCACCAGGTCCTGCAGCCGCACCAAGTTCTTCTTGTCTTCCTCTGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048644-0-5,0-4,0-3,0-2,0-1,0-0-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCCGCCCTCTCCTCTG
R:
AAGAAGAACTTGGTGCGGCTG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]