RnoALTA0025271-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33606113-33606678:-
Coord C1 exon
chr15:33606583-33606678
Coord A exon
chr15:33606162-33606432
Coord C2 exon
chr15:33606113-33606161
Length
271 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ATGAATCCGGATTTCCGCAGAGC
3' ss Score
6.44
Exon sequences
Seq C1 exon
ACAGAGGAAGACAAGAAGAACTTGGTGCGGCTGCAGGACCTGGTGGACAAGCTGCAGTTGAAGGTGAAGGCCTACAAGCGCCAGGCTGAAGAGGCG
Seq A exon
AGCACACAGCCTCACTCCACACAGTGGGTGGCAGTGACAGATCTTAAACACTGAACACGTTTGAGGAGGGTGCCAAGCAGGACATCCCTGGGAGGGCTGTTGCAGGAACCGGGTGAGAAGTGGCTCAGGGACCTGGACCATGAGAACCTGAGAGCCCATTCCAGAGTTCTCACCCCAATTTTCCATCCCGTTTATCTGCTCCTAGGAGGAACAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCAGAG
Seq C2 exon
GAGAGGGCGGACATTGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757-73-83,73-82,73-79,73-78-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGAAGACAAGAAGAACTT
R:
CTTGGCCCGCAGCTTGTT
Band lengths:
144-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]