RnoALTA0001273-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030579 | AC126572.3
Description
NA
Coordinates
chr12:13323547-13328510:+
Coord C1 exon
chr12:13323547-13324174
Coord A exon
chr12:13326665-13326787
Coord C2 exon
chr12:13326788-13328510
Length
123 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGCCGTTTCCACTACAGGTA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAATGTGCAGACCACTTCTTCAGAGAGGACTCCGGACAGGAACGCAGGCCTGCAGAAGGCTCCTGCCGTGAGCTACAGTGATCTGGACACCTACTTCCCAGGGACCTGGGGTGACACACCTGACCCATGTGCCCTTTGAAGCCTGGGGGATGGTCATTCTTTGGAAGGAGACAAGGAGCTGTGCCCATGGGCACAAGCTTCCCAGCCTTGGGATAGGTTAGTTCCCACAGTCTTATGTCAGGGGGCAAGAGGGCCACTGGTCAGCGGAGGTGAATTCCTGTGTACATCCATTAAGTAATAGTTCTGGCTATTCTGTGTAGGAATGGGGTTCAGCCACCACCACCTCCCTTCTGAACAGTTTCCTTTATTCCTCTTAGCACAGCCTGCTCTGGGAGAACCTGGTGTGACGGCCAGGATGGAGCTGGGCCCAGCAACCCAGACTTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
Seq A exon
GTAGCAGTGGTGGGAATGAGAGGCAGGAGGAAGAGGAGGTTCAGGAGGGGCGCAGCCATCCACAGCAGCCAGCGCTGGCAGCCTCAGTCGGGGTCAGTAACTATGTCTACTATATCGAGGCAG
Seq C2 exon
AGCAGCAGGAACCACAGGACTTGCGAGTGCACCGATTAAAGCGTCGGTCAGAGCCGGAACAACAGCTGGGGCACAAGCAGTTGCAAGAGCAGCAATCTCAGCCTCAACTGTTAGGATCCCAGCCAGAATTGCAGCAGCAGCAGCAGCATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGATGGGCAACAGCAGCTGTCTCCACCACAGCAAGAACGACAGGAAGACCGGTCCATGCGGCATCATCAACCACAACCACAGCTGCAGGCGGTGCAGCTGCCGAGACTTGGACAAGAGCAGCATCTGTTGCTGCAGCAGCACCAGACGAGGCAGCCTCCAAACCAAGCACAACAGCCGTTTCCACAGCAGCAGGAACAGCAGCAAATCCAACAGCAGCATCTTGTGCAGCAGCAAATGCATGAGCCTGCGCCACAGCAGCAAGTGCAGGAACAACACCAGTCACAGCAGCAGCAGCTTCTCCAACAAGAGCAGCTGTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030579-1-7,1-6,1-5,1-4-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGAGAACCTGGTGTGA
R:
CTGCAATTCTGGCTGGGATCC
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]