MmuALTA1044274-4/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000093910 | Zfp853
Description
zinc finger protein 853 [Source:MGI Symbol;Acc:MGI:2685638]
Coordinates
chr5:143289276-143292344:-
Coord C1 exon
chr5:143292227-143292344
Coord A exon
chr5:143289660-143289778
Coord C2 exon
chr5:143289276-143289659
Length
119 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGCCATTTCCACTACAGGTG
3' ss Score
9.94
Exon sequences
Seq C1 exon
CCTGCTCCGGGAGACCCTGGTGTGACCGCCAGGATGGAGCTGGGCCCAGCAACCCAGACCTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
Seq A exon
GTGGCAGTGGTGGGAAGGAAAGCCAGGAGGAAGAAGAGGTCCAGGAGGGGAGCAGCCACCCACAGCAGCCAGTGCTTGCAGCCTCATTCGGGGCCTATTACTATATTGAGCCAGAGCAG
Seq C2 exon
GAGGAACCGCAGGACTTGCGAGTGCACCGAGTTAAGCAGCAGCCAGAGCAGAAACGTCAGCCCGAGCACAGGCAGTTGCAAGAGCAGCAACCGCAGCATCAGCTGTTAGGATCCCAGCCAGAATCGCAGCAGCAGCAGCAAGATGGACAACAGCAGCTGTCTCCGCCCCAGCAAGAACAGCAGGAAAACTGGCCCATGCAGCACCAGCAACCAAAACCACAGCTGCAGGTGGTGCAGCTGCCAAGACTTGGACAAGAGCAACATTTATTGCTGCAGCAGCACCAGATGATGCAGCTTCCACACCAAGCACAACAGATGTTTCAACAGCAGCAGGAACAGCTGCAACTGCAGCAAATTCAACAGCAGTATCTTGTGCAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000093910-2-12,2-11,2-10,2-9,2-8-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACCTTTGTGTTGGAGC
R:
TTTCCTGCTGTTCTTGCTGGG
Band lengths:
253-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types