MmuEX1028682 @ mm10
Exon Skipping
Gene
ENSMUSG00000093910 | Zfp853
Description
zinc finger protein 853 [Source:MGI Symbol;Acc:MGI:2685638]
Coordinates
chr5:143287038-143292349:-
Coord C1 exon
chr5:143292227-143292349
Coord A exon
chr5:143291337-143291459
Coord C2 exon
chr5:143287038-143289778
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCTTGTAAATTTAACTCTAGCAG
3' ss Score
3.39
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CACAGCCTGCTCCGGGAGACCCTGGTGTGACCGCCAGGATGGAGCTGGGCCCAGCAACCCAGACCTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
Seq A exon
CAGGCATAACACTTCAGGTGACATCTAACTACATGGTCAATAGAATGCTTCTGTGGAAACTGCTGTCCCAGGAAGTCAGAGTGACCACGTGACCAAGCTAGAAATGAGGCGATTCACACCGAG
Seq C2 exon
GTGGCAGTGGTGGGAAGGAAAGCCAGGAGGAAGAAGAGGTCCAGGAGGGGAGCAGCCACCCACAGCAGCCAGTGCTTGCAGCCTCATTCGGGGCCTATTACTATATTGAGCCAGAGCAGGAGGAACCGCAGGACTTGCGAGTGCACCGAGTTAAGCAGCAGCCAGAGCAGAAACGTCAGCCCGAGCACAGGCAGTTGCAAGAGCAGCAACCGCAGCATCAGCTGTTAGGATCCCAGCCAGAATCGCAGCAGCAGCAGCAAGATGGACAACAGCAGCTGTCTCCGCCCCAGCAAGAACAGCAGGAAAACTGGCCCATGCAGCACCAGCAACCAAAACCACAGCTGCAGGTGGTGCAGCTGCCAAGACTTGGACAAGAGCAACATTTATTGCTGCAGCAGCACCAGATGATGCAGCTTCCACACCAAGCACAACAGATGTTTCAACAGCAGCAGGAACAGCTGCAACTGCAGCAAATTCAACAGCAGTATCTTGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000093910_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.000 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
ENSMUST00000212715fB20028
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAACCCAGACCTTTGTGT
R:
CTGACGTTTCTGCTCTGGCTG
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types