MmuINT1035767 @ mm10
Intron Retention
Gene
ENSMUSG00000093910 | Zfp853
Description
zinc finger protein 853 [Source:MGI Symbol;Acc:MGI:2685638]
Coordinates
chr5:143287038-143292349:-
Coord C1 exon
chr5:143292227-143292349
Coord A exon
chr5:143289779-143292226
Coord C2 exon
chr5:143287038-143289778
Length
2448 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGCCATTTCCACTACAGGTG
3' ss Score
9.94
Exon sequences
Seq C1 exon
CACAGCCTGCTCCGGGAGACCCTGGTGTGACCGCCAGGATGGAGCTGGGCCCAGCAACCCAGACCTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
Seq A exon
GTGAGGGTTGAGGTATGGAGACAGTAGGGCCCCCAGCAAGGATTCTTTAGTTGAGTCGCAAGCTGGCACAACCCAGACCACCACGGAGGGACCCCATGTGTGTCCAGCATATTTACGACTGCTAACCCCAGCTACCTTGAAACTTAGCGTAGGACCTGTTGAGGTGGCTGCCAGGCCAAGGTCTTGCTGGAGAAAGAGACACCTTGACAGGATTCAGTAGCCTCAGCCCTGACCCCCACACCTGGGCTGGCTCTAACCTGCTTTTCCCATGTGCACCCCCCCCATCTCCCACCTGGAACTGGAGGGTGTTTCTCTGTCTCTAGTGCCTCAGACAGTGGCTAAATGGCTTCTTTCCTGTCCTTCCCTCTACCCTTGTCTCATTTCCTCAACATCTGTCTCCTTCCCCCCACCTGCCACACGGGCTCCCAGGGTGTGGAACCTCCCAGACCCCTCTCTGAGCCCCATGCAGGGATGGGGCAGCCTTTAAGGGTGGACAGGAGTCCATTTTCACACTGTGCTTTAAAGCACAGTGACAGGGAGGGGCAGGCTTGAACAGAGCTGAGAGAACCAGGATGAGCTGGGCGTGGCTGGAATCCCAGAACTTGGGAGGCTCAGTTTGACCTGTGTAGTGAGCTCCAAGCTAGGACTATATACAATGAGACACTATTGCACATCGAGAATATATATCAGGAATATTAGAATAGAAGGATCAAATCGGGCCCTACCAATTGAACAAAGACTCTTTCCGCTTGTAAATTTAACTCTAGCAGGCATAACACTTCAGGTGACATCTAACTACATGGTCAATAGAATGCTTCTGTGGAAACTGCTGTCCCAGGAAGTCAGAGTGACCACGTGACCAAGCTAGAAATGAGGCGATTCACACCGAGGTGAGGTCTGTCCCTGCAGAGGAGGCACGAGAACGGAGTGTGTGAGAGGGTGCTGATCTTACCCTCGGGACGTGTTCCCTCAGGTGTCTGCACCCACTGCCCAACACCCAGCTGCTCTGTGGAAGCGGCTCTAGAAAGAAAAAAAGTGTTCCAGGGGCTGGGGAGGTGGCTCAGTGGGGAGAGCATTCGCCCTTCAAGCTTGAGGACAAGAGTTTGAACCCCCAGAGTTCAAGTAGAGGCAGAGTAGTTCATTGTCTGAATCGGAGCACTTCTGTTATGAGAGGGGAGGTAGAGGCAGGAGAATCCGTGGACACTCCGGGGCCAGCTAGCCTGGCAGGCCTGTACAGCGGCAGACAGGAGACCCTGTCTCCAAGTGCAAGGTCAGGCCCAACACCCAACTTGTCCTCTGACCTCTATAGGTGTGCTGTGGTACCTATGTTCCCACAAGCACACGCATGGACACACATGCCCATACACACAAGACACACAGATTTTAAAAATGCATTTAACAAAGGTGATTAGAAAGCTTGGTTTTGTAAAATATAATTACACACAACTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATGTGTGGTGTGCATGTGTGTATTCATGTTTCTTGTCTGCATTTGGGTGCTCTTGTGCGTGGGTGTGGATGGACATGTGTGCACATGCATTTGGAGACCCCAGACTGATGTCAAGTCATACTTGATCATTCTTCCACCTTATTCAATGGGTCAGGGTCTCTGAATCGCGCTCAAAGCTTGCCTATACGGCTAGTCTTCCCAGCCAGCTTCCTCCAGGGACCCCCTCTCTCCACTCTCTGAGGGTGGAGTTATAGGTGTGCTGCTGTGCCTGACTTTTCAGTTAACTTCTGAAGTACAGACTCCATACCTGACCCCCCTGGCTTCCTTGATGCGTCAATGCTTTCTAGAAATGGCTTGCTGTATCCTTATAGAAATGGCTTGTTATTCACAGACAAGGCAAATTTCACTTATTTAAAGTGTGAGCGTTATCTGGCGGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGTGAGTTTAAGGCCAGCCTGGTCTATAGCCTGGGACAGCCAGGGCTACACAAAGAAATTCTGTATCAAAAAACCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGTGTGTGACCATAAATGGGTTCAGAGCTCAGCCACTGGAATAGCTGGCCTCCCTGCATGGGGAAAAAGAGCTAGACACATTTCAGGGAATGGTGTCAGGATCCCCAAGAGCTAAGCATGGGACTCATTTGAAGGGGGCTCAGTGGGAGTCTGAACAGGGTGATCAGGGGACTCTGGGAATGTTTGTTCTGTCATCGTTGTCACTTGCTCTCACATTTTTTGGGTCCCCGCTCAGAGCCCCTTAGTGTATCCTGAATGCATCCTTCTGGGGGTTTGGTCCGGATCCTGCCTATCACTCCTTCTCGCCTGGCTTCCTGCCATTTCCACTACAG
Seq C2 exon
GTGGCAGTGGTGGGAAGGAAAGCCAGGAGGAAGAAGAGGTCCAGGAGGGGAGCAGCCACCCACAGCAGCCAGTGCTTGCAGCCTCATTCGGGGCCTATTACTATATTGAGCCAGAGCAGGAGGAACCGCAGGACTTGCGAGTGCACCGAGTTAAGCAGCAGCCAGAGCAGAAACGTCAGCCCGAGCACAGGCAGTTGCAAGAGCAGCAACCGCAGCATCAGCTGTTAGGATCCCAGCCAGAATCGCAGCAGCAGCAGCAAGATGGACAACAGCAGCTGTCTCCGCCCCAGCAAGAACAGCAGGAAAACTGGCCCATGCAGCACCAGCAACCAAAACCACAGCTGCAGGTGGTGCAGCTGCCAAGACTTGGACAAGAGCAACATTTATTGCTGCAGCAGCACCAGATGATGCAGCTTCCACACCAAGCACAACAGATGTTTCAACAGCAGCAGGAACAGCTGCAACTGCAGCAAATTCAACAGCAGTATCTTGTGCAGCAGCAAGTATATGAACCTGTACCGCAGCAGCAAGTGCTGCTACTGCAGCAGCTGGTACAGCAGCAGCAAGTGCAGGAACAACTGCCATTACAGCAGCCAACGCAAGAGCAGCAACAGTCACAGCACCCACAGCTTCTCCAAAAGCAACTGTTACAACAGCAGAGACAGTTGCTGCTGCAGCATGTGCAAGATCAAGTATTGCAGTTACAACAAGTGCAAGAGCAGAAGCTGTTGCAACAGGAGCAGTTTCAGCAGCAGCTGCTCCAACAGCAGCAACTGCTGCAGCAGCAGGGACAGTTGCAACAGCAACACTTACAGCAGCAGGTACTGGTGCTGCAGCCACAGGGACAGCTACAGCAGCAACTATTGCTGCAGCAGCAACAGACACAGTTGCAGCAGCAGCTGTTGCTGCAGCAACAGGCACAATTGCAGCACCAACTATTACTGCAGCAGCAGGAACAGTTGCAGCAGCAGTTATTGCAACAGCAGCAGGAACAGTTGCAGCAGCAGCAGTTATTGCAAAAGCAGCAGGAACAGCTACAGCAGCACCAGCAGCTGCAGCCTCTTCCACCAGAGGACGAGGAAGTGGAACTTGAGCTCATGCCGGTGGACGTGGGGTCTGAGCAGGAGCTGGAGAGGCAGCAAGAGCTGGAAAGACTGCAGGAACAGCGGCAGCTGCAGCTAAAAATGCAGGAGCAGCTACGTCAGCTAGAGCAGCACCTGGAGAAGCAGCAGCAGCTGGAGCAGCTGCAGCAGCAGCAGCAGCTGGAGCAACAGGAGGTGCACCTGGAGCTGACCCCGGTGGAGCTAGGCGCCCAGCAGCAGGAGCTGCAACTGGAGCTGACCTCTGTGCAGCCAGAGCTGCAACTAGAGGTGGTGCCAGCTCCGGGAGGTTCAGCGCCAGCTCCAGCCACCGTTGTGGTGGCCCCTCCAGGTTACGTGGTGCTGCAAGAGCTCATGGTGCTGCCCGCTGTGGCCACATCCACTGTGGTAGCTATCCCGGGCCCCGCGGGGAGTGCGGCTCTGACTCCCGCCAAACAGCGGAGGAAGCGGCGAGCCCGGGACAGGCCGACCATCTGCAGCGAGTGTGGCAAGGGTTTCAGCCGCAGCACGGACCTGGTGCGACACCAAGCCACACACACTGGGGAGAGGCCGTACCTCTGCAGTGAGTGCGGCAAGAGCTTCTCACAACATTCCAACCTGGTGACCCACCAGCGCATCCACACGGGCGAGAAGCCCTATGCCTGCACCTACTGCTCCAAGTGCTTCAGCGAGAGCTCGGCGCTCGTGCAGCATCAGCGCACCCACACCGGAGAGCGGCCCTACGTCTGCGGTGACTGCGGCAAGCGCTTCAGCGTCTCCTCCAACCTGCTGCGCCACCGTCGCACCCACTCGGGAGAGCGGCCCTACGTGTGCGAGGACTGCGGCGAGCGCTTCCGGCACAAGGTGCAGATCCGCAGGCACGAGCGCCAGCTGCATGGGGCAGGACGCTCCCGAGGCCTGGGACTCCTGCGGTCCTCCAGGCCCGGGCCTTCTACAAGGGCCCAGCAGAACTCTGCATCCGGGAAGCACTGAGAGGTGTTAGCGCCATCCACACACACACCTCAACCCTAGGTCCTGGCCTTAACCCCATCTTGAGGTCTTTCTGGGTATCTTGAATTATCCTTAAGAAAGGAAGACTTCCATCCCGCCTGTGACCCAGGCCGCCCCACCCCCACCCCCCAAGCACCAAGTTCACAGATTTCTCATCCCTCCCCCCGCCCCCCCCCCAAACCATCTCCAGGTCGGTGAAAGAGACTGCCCAGCTTTGCCTGGGAAAATAGGACTGAGAACTGGCTTGGTAGCAAACAACTCGTGAGATTTGATACAACCAAACACTAACCAGCAAATGAAATATTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACTGGAAAAGGAATGGATCATTCTGAATACTTAAGGAGAAACTGGAAGGGGAGGGGCAGAGGATGGAGTCCAGCCTACTGTAAATTGCTTGCCTAGCAGAAAGCCCTGGTTTTCATCTCCAGCACCATACAAACCCGGTGTGTGGACCCAGATAGTCCCAGCACTTGGGAGGTGGAGACAGGAGACTGAGGCTCCAGGTCATTGTCAGGCACATAGTGAGTTGGCAGATAGCCTGGGTTACATGAGACCCTGCCTCCAACAAAAAACAAAACAAATAAACAAACAAAAACTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000093910:ENSMUST00000212715:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types