HsaINT0188562 @ hg38
Intron Retention
Gene
ENSG00000236609 | ZNF853
Description
zinc finger protein 853 [Source:HGNC Symbol;Acc:HGNC:21767]
Coordinates
chr7:6617190-6624290:+
Coord C1 exon
chr7:6617190-6617307
Coord A exon
chr7:6617308-6621121
Coord C2 exon
chr7:6621122-6624290
Length
3814 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGCCATTTCTTCCACAGGTG
3' ss Score
12.41
Exon sequences
Seq C1 exon
CCGACTCCCGGGAATCGGGGTCTGACCGCCAGGATGGAAGTGGGGCCAGCCACCGAGACCTTCGTGCTGGAACTTCAATGTCTTGAGGATGGGGGCCCAGGGCCTGACACCCTCTCAG
Seq A exon
GTGAGGGCCTCGGGGGATCCCTTGACAGAGCCTCATGCCTGCCTGCTGTGGCAGAAAGAGGCTCAAGGGTGGCGGGCAGCCTGCACAGACTCACACCAGCCAACCTCAGCTGCATTGAGTAACACCAGCAGCTCTCCCTTGAGATTTTCCAAGGTGGCTGTGTCAGGCAGGCTGAGGCCAGGCTGGTGAGGGGCTCCCCGCTCCCCACATGGGTGCTGACTGGACTTAACACTCACACGCGCTGCTGGCTGGAACTCATTGCTGTGTTTCCTGGCAGCCAGAGGGCCTCCACCATCCTCCCACCTGGCCCCAGCTCCTGAGTCAATTTCCACTCAATTTCCCGGATCCGATTCAGGTACTAATAGGCTCTCTTCCTCTGCCCCTCCTGCCCCAGATGTTGGCTCCCTGGCTTCTTCTCCCCTGTGGCCTCGTAACCTTTTCCACTTTAGCTTGACCTCTGCTTGCATCTGTTTTTCTCTACCTGATGCCCAGGGGCAGATGTGGTACTGCAGAACCTTCCAAGACCTCTTCCTCTGGGACCCACTCTGGGCAAACCTTCTCTGGTGGCCACACTCATGAGAGCCAGTTTCCATTCTGTGCTTTAAGGGTGCTGAGTGAGGGCCTGGGGCAGGGCGGGACAGAGCTTGAAAAGGACCAAGGGAATTGGAGGGGGTGGGATGGGGATGTGTGGAGTCAAGAAGGACCGTTCTGACCGAGCATGATGGCTCATTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCAGTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACACTGTCTTTACTACAAATACAAAAATGAGCTGGGTGTGGTGGGCACCTGTAATCTCAGCTACTCGGGAGGCTGAGGCAGAAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAGGATCATGCCACTGCACTCCAGCCTTGGTGACAGAGTGAGAGTCCGTCTCAAAAAAAAGAAGAAGAGGAAAAGAAGACCCTTCTGACTTGTAAATTTACCTGACAAAACTTTGGGAGGGTATACACGTCAGACAACACTGGACTAGATGTTCACTAAAATGCCTTTGTTAAAAATGCTGAGGTCAGGCACAATGGCTCACACCTGTAATCCCAGCACTTTGGGAAACCGAGGCAGGTGGATCGCTTGAGCTCAGGAGTTCGAGACCAGCCTGTGAAACATGGCAAAACCCCATCTCTACAAAAAGTTTAAAAAATTAGCTAGGCGTGGTGTTGTGTACCTATAGTCCCAGCCACTTGAGAGGCTGAGATGGGAGGATCGCTTGAGCTTGAGAGGTTGAGGCTACAGTGAGCTGAGATTGCGCCACTACACTCCAGCCTGGGTGACAAGAGTGAGATCCTGTTTAAAACAAACAAACAAACAAAAACTGAAATTGCTGCCCCAGGGAGTCAGAGTGGCCTGTGGTCAAGACTGTGCCAGAAAAGAGGAGACTCAACACAGAGGCATGATCTGTCTCATTCCTCCCAGAAGAGGTGGGAGAAAGGAGGGTCCATGAGACATTGGACTTGCTGGGGGGACAGTTTTCACCCTGTCTTCTACCATGTGCTTCCCCCCAGCCAATGTCAGTGTCTATGAAAAGCACGCTCACGGATCTGTTAGCCTAACCAAAGGTTATTAGGAATATTTTACTAGAGGAAATTATATGCATACAGATCTCCCTTGGTGGATTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGATTGCGGTGGCTCAATCTTGACTCACTGCAACCTCCACCTCCTGGGTTCAAGCAGTTCTCCTGCTGCAGCCTCCCGAGTAGCTGGGACTATAGGTGCCTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTCCCTTGGGTTGTTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTGATAAGGAGTCTTGCTCTGTCGCTGGGCTGGAGTGCACTGGCGTGATCTCAGCTCACTGCAACCTCTGCCTTTCAGGTTCAAGTGATTCCCCAGCCTCAGCCTCCCGAGTAGATGGGACTACAGGCGCACACCACCACGCCCGACTAATTTTTTGTATTTTAGTAGAGATAGGATTTCGTCATGTTGGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCATCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCCGGCCATCCCTTGGTTTTATTAAATCAATATATTCTTGGAAAAATGGCCAGAAAGCAAACTTTTATAAATCAAAGCATTGTCTTCCATTACAAAATGGAAAACATATGATGTTATAGGGAGAAGAGATGTTGAAATCAGAGTTGGGAACGGAGAAAGCCTCCTCAAGTCACATGTAGAAAGAAGGATTGGGATTTTCCAGTAGCACAATAGTAATACTCAAAACGAGAATCTCATGGTGTACACGGTGCGGAAAGAGAAGCGTAGTAACGGAGTGGTGCTGTTTTTGCAGGGCCTCCCAGGTTTATGCCTCCCAAAGTGTTGCGATTACAAGCATGAGCCACCACGCCCAGCCTAGTTAGTCCTTTGTATTCCTGAATGACAATCTCAAACAGTCCCAGTCTCCTTGGTATTTTTTTGTTACTTTGCAAACCAATCCTAACCTTCAGAGAGAGGGAATTTTCAAGCACCTACCAGGCTCCAGGTACTATGCCAGGGCTCTCCTTGTTGTACTGTTTAAGCAGATGGTGTGGGTATCACTGAGCTATTTTGTAGACAGGACTGTGAGCCTGCAGGAGGTTGTATACCTGCCGACTGGTAGAGTTAGGTTCTGAACTGAGAACTTCCTGTCTGAAACCTAGTGGTCTCTCTGACACTTTGGTGATTTTGGGAAACTACTTGTGGTAACACCTCCGGGCAGCTTTATATAAATTCTTTATTATTTACAGAGAAGGATAATTTCATTTATTTAAGGTGTGGCTGTAAGGTCGGAGTTCAGCATGGGGTTGATGGCTTGGCCGTTGGGACAGCCAGTTCAGTGGTTTCTACTGGAGGGTGATTAAGCGCAAGAGACTTCTCAGGATGGTCAGGGAGCCCCCAGCATCCCTGCTAGTGCCAGTGCCGAGATCAGAGCATGGGGCCTGTGTAAAGGGAAGCTCCAAGGAGGGATCAGGGAGCTGGGGTCCAGAGGGAGGTCACCAGCAGTCCCTTGGCCACCTACCTTCCTTCCTTCCCTTCCTTCCCTTTCTTCCCTTCTTCCTTTCTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTTGAGATGGACTCTCCCTCTGTCACCCAGGCTGGAGCACAGTGGTGTGATCTCGGCTCACTGCATCCTCCACCTCCTGAGTTCAAGTGATTCTCCTGCCTCAGCCTCCTTAGTAGCTGGGACTACAGGCACCTGGCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGCTTTCGCCATGTTGCCCAGGCTGGTTTCGAACTCCTGAGCTCTGGCAATCTGCCCACCTCGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCACCTGGGCACATTTCCAAGCCACCCCTGCCCCTGCAGCATTTCAGTTTCTGCTGGGCTGCTATTGTTACTCGATCCAGCACTTTCGGGCTCCTGCTAAGAGCGTGTTAGTGTATCTTTGAGGGCAGGGTAAGGGGCAGGTCCTGGGGTCTGCACCAGAGAGCTTCCTGTAGATCTTTCTCTCTTGGCTTCCTGCCATTTCTTCCACAG
Seq C2 exon
GTGGCAGCGGTGGGAGCGAGAGTCAGGAGGAGGAAGAGCCTCAGGAGAGGAACAGCAGTCCACAGCGGCCAGCAGTCTCGGCCCCAGTGGGGGCCAGTGAAATCGCTGAGGAAACCCGGCCGGGACAACGAGAGTTGCAACTGCAGCAGTTAGAACAGCAGCCCGAGCCGCAGCAACAGCCGCAACACGAGCAGCTGCAACAGCCGCAGCCACACCTAGAACTGCAACAGCAGCCGCAGCAAGATGGGCAACAACAGCTATCTCAACTACAACAGGAAAAACACCAATCCGTGCACCATCAGGAACTGAAACCAGAACTGCAGCTAATGCACCAGCAGCAACAGTTACAGCCACAGCAAGTGCAAGAGCAACAGCGGTTGCAGCAGCAGCAGGAGCAGTTACAGACGCAGCAAGCACAAGAGCAACAGGTATTGCAGCAGCAGGAACAGCTACAGCAGCAAGTGCAAGAGCAACAGCTGTTACAGCAACAGCAGGAACAGTTACAGCAGCAGCAGCTGCTACAACAGCAGGAACAGTTACAGCAGCAACAGTTTCAACAGCAGCAGGAACAGTTACAGCAGCAGCAGCAGCTACTATTGCTGCAGCAGCAGGGACAGTTACAGCAGCAACTGTTGCAGCAGCAGCAGGCACAGTTACAACAGCAGCTGCTGGAACAGCAGCAGGCACAGTTACAGCAGCAGCTACTGCTGCAGCAGCAGGAACAGTTACAGCAGCAGCAGCAACAGCAGCTGTTGCAACAGCAGCAGGAACAATTGCAGCAGCAACAACTGCAGCCTCCTCCCCTGGAGCCCGAGGAGGAGGAAGAGGTGGAGCTGGAGCTCATGCCGGTGGACCTGGGGTCAGAGCAGGAGCTGGAGCAGCAGCGGCAGGAGTTGGAGCGGCAGCAGGAGCTGGAACGGCAGCAGGAGCAGCGGCAGCTGCAGCTCAAACTGCAGGAGGAGCTGCAGCAGCTGGAGCAACAGCTGGAGCAGCAGCAGCAGCAGCTGGAGCAGCAGGAGGTGCAGCTGGAGCTGACCCCGGTGGAGCTAGGCGCCCAGCAGCAGGAGGTGCAGCTGGAGCTGACCCCCGTGCAGCCGGAGCTGCAGCTGGAACTGGTGCCAGCCGCAGGGGGCGGCGGAGCGGCGGTCCCGGGGGCTCCGGCCGCGGTCGTGGTGGCTCCCCCGGGCTACGTGGTGGTGCAGGAGCTCATGGTGCTGCCCGCCGTGGCAGCGCCGGCCGTGGTGGCCATCCCGGGCCCGGCAGGCAGCGCGGCGTTGACCCCTGCACGGCAGCGGCGGCGGCGGCGCGCTCGGGACCGGCCGACCATCTGCGGGGAGTGCGGCAAGGGCTTCAGCCGCAGCACGGACCTGGTGCGCCACCAGGCCACGCACACGGGTGAGCGGCCACACCGCTGCGGCGAGTGCGGCAAGGGCTTCTCGCAGCACTCGAATCTGGTGACGCACCAACGCATCCACACGGGCGAGAAACCCTACGCCTGCTCCTACTGCGCCAAGCGCTTCAGCGAGAGCTCGGCGCTCGTGCAGCACCAGCGCACGCACACCGGGGAGCGACCCTACGCCTGCGGGGACTGTGGCAAGCGCTTCAGCGTCTCCTCCAACCTGCTGCGCCACCGGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCGAGGACTGTGGCGAGCGCTTCCGACACAAGGTGCAGATCCGCCGCCACGAGCGCCAGCTGCACGGCGCGGGCCGCTCCAGGGGCCTCGGCCTGCTGCGCGCCTCGCGGCCGGCGGCCCTCGGTGGCCCAGCCCGCGCGGAGCAGGCCGCTACAGCCACTGCGCCCGCAGACAAGGCGCTGTGAGGGCCGTGATCGGGGCTGCCTGGCCGGGAGGGGACCCCCCACCCGCCTCCACCTGAAAAGCTCCTTGACCCGGGTTCATGGGCGCTGGAGGCGTCCTGGAATATCCCTGGAGTAAAAGGCTTCCACCATCATCATCATCATCATCTTCCGGATTCCCTGAGAAAATACCAGGTTCACAGATTTCACCGCCAGAAAAATCCATCCGCCAAAAGAGAAGTGGACCGGGGCTGAAACAGCACACGGGACACGTTTGTCTGCCCTTTGAGGGGTCTGCCAAAGGTTTTCCCTCCGGGAAAACTGGACTTACTACGAACGAGGAAAAACCCCCAGTGGCGAGACGATTAATGACACTGGCCGAGGACTGGACACCCACCAGGGAATCAAGACGTGGTGAGACACACGTGGAAAATCTTCGATCCTGGTGAAAATGATCGCAAGGAGAAATTCGGGGAGGAAGCAAACTTGTTTGCACTATGTAGAAACTGACCAAGGCATCGAATCGTCCTCAGAGGCATTTGCCTTGAAAATACTTTCCAAGATGAAAATTCATCAGGGTGGGTATAATTCTGATGAAAACGCCTGTGTTCATCAACACAGGGTCAGAGCGCTCACCGGGTCGATGTGCAAATCCAAGCCAGGAAGTCCTGCTCCGGGTGGAAGGTAAAACCTTCCCTCCAGGGAACCAGGGGCTCCGGCGGGCATCGGAGGCAGCTTCTTGGCCTCTGCTGCTGTGTCCCCCAGTCCCCCCAGCCCGCATTAATGTCCTCTGGAATAAGAGCCTGTGGCTGAAGCAGAGGGCCTTCTGGGAGAGCTCTCCAAGGTCTGGAAGGAGGGTCCCCCAGAAGGAGCTCCGGGGTAGCCCCACTGTGGCCCCCCTGGACTCCACCAGCTTCATGCTTCTCAGATGCTACCCAGGGGCCGGCCCGGGGAGACCAGGGCAGATTTCTCCCGCACCAGGCTGTGGAGGTTTGGAGGGCTGCCTGAGCAGACACTGTGCCATTGCTGGGGCTGGGGAAAGAATATCTGAGACGACGTTTGGGAGCAATGCTCTTTACCACGTTCACCAAGTCGTCTGGGGCAGGGGTTGTGAGCTGCAGCAGTTGCTGGTGCCTTGTGGGAAGGTGGGGCAGGGAGGAGGCTGCCCGCCACCTCTGCCCCCAGTCACTTCCTGCTTGACCTGACTCTTCACATGTGGCTGCTTAATTCCTGCCCCTCTCCCCCCAGCTGCTTCTCCTTTACTAACACACCTGCTACATTTTACACATGTGTTGGTAAGTGAGAAACAGAAACGAAAAATAAATTAAAATGCAGAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236609:ENST00000457543:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains