RnoINT0009275 @ rn6
Intron Retention
Gene
ENSRNOG00000030579 | AC126572.3
Description
NA
Coordinates
chr12:13323547-13328510:+
Coord C1 exon
chr12:13323547-13324174
Coord A exon
chr12:13324175-13326664
Coord C2 exon
chr12:13326665-13328510
Length
2490 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTGCCGTTTCCACTACAGGTA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GCGGGAAATGCTGTTCCAGGTGAGGCCTGGCGGGAGATCCTTGCAGGCGCGCACAGACGCTTCTCTAAGGAGAGCTTCTAAAGCCAGAGGGAGGTGTAGGCAGCTGGCGCGGGGGTGTAGGGACTCCCGAATGTGCAGACCACTTCTTCAGAGAGGACTCCGGACAGGAACGCAGGCCTGCAGAAGGCTCCTGCCGTGAGCTACAGTGATCTGGACACCTACTTCCCAGGGACCTGGGGTGACACACCTGACCCATGTGCCCTTTGAAGCCTGGGGGATGGTCATTCTTTGGAAGGAGACAAGGAGCTGTGCCCATGGGCACAAGCTTCCCAGCCTTGGGATAGGTTAGTTCCCACAGTCTTATGTCAGGGGGCAAGAGGGCCACTGGTCAGCGGAGGTGAATTCCTGTGTACATCCATTAAGTAATAGTTCTGGCTATTCTGTGTAGGAATGGGGTTCAGCCACCACCACCTCCCTTCTGAACAGTTTCCTTTATTCCTCTTAGCACAGCCTGCTCTGGGAGAACCTGGTGTGACGGCCAGGATGGAGCTGGGCCCAGCAACCCAGACTTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
Seq A exon
GTGAGGGTTGGGGTGTGGAGACAATGGGTCCCCTCCACAAGGATTCTTTAGTTGAGTTTGCAAGGTGGCACAGTCCAGACCACCACAGAGGAACCCCATGTGTGACCAGCATACTCATGCCCGCTAACCCCAGCTACCTTAAAACTTGTTTTAGGACCTGTTGTGGTGGCTGTCAGGCAAGGTCTTGCTGGAGAGAGATACTTAGAGATTTAGTAGCTTCATCTCTGAGACCCGCATCTGGATTGGCTCTACCCTGCTTTTCCCAGGTGCCCCCCCAAACCCCTACCATCTCCCATCTGGGGCTGGAGAGTTTTTCCTCTGTCTCTAATGCCTCAGACACTGGCTGAATGGCTTCTTTCCTGCCCTTACCTCTCTACCCTGTGCCCATCTCCTTCCCTCCACACACAGGCTCCCAGGATGTGGAATTTCCCAGTCCCCTCCCTGAGACCCGTGCAGGGGCGGGCAGCCTTTAAGGGTGGACAAGAGTCAGCTTTCACATTTTGTGCTTTAAAGGCAGCAAGTGACTGTGTGGGGACAGACTTGAACAGAGTTGAGAGAACCAGGAAGAGCTGGGCCTGGGGACACCTGACTGGAAACCCAGAACTTGGGAGGCTCAGGCAAGAGGGTCACAGTTTGACGGCTTGACCCATATAGTGAGTTCCGAATTAGGACTATATACAATGAGACAGTGTTGCACAGCAAGAGTGAGAGAGAGCGAGAGAGAGCAAGTGAACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAATATATATCAGGAAAATTAGAGGAATAAAATTAAATGGGGCTCTATGAATTGAACGAAGACTCTTTCCACTTATAAATTTAACTCTAGCAAGCACACACTTCAGGTGACATCTAACTACATGGTCAATAAAATGCTTCTGTGGAAACTGCTGTCCCAGGAAGTCAGAGTGACCACGTGACCAAGCTAGAGATGAGGAGACCTCACACCGAGGTGAGGTCTGTCCCTGCATAAGAGGCACGAGAAAGGAGTGCGTGAGAGGGTGCTGATCTTGTTCTAGGGACACATTCCCATAGCTGTCTTCATCTACGACCCAACACCCAGCTGCCCAGTAGAAGTGTCTCTGGAAAAGAAAAGGTGCTTCAGGTGTCCCAGTGGGGAAAGTGTTGGCCCTCCAAGCTTGAGGACAAAGGTTTGAGTCCCCGGAATTCAAGTGGAGGCATAGTCTGTAATCACAGCGCCTCTATTGTGTGACAGGAGGTAGAGGCAGGAGAATCCTTGGAAAGTCCAGGGCCAGCTGGCCTGCAGTGACAGAGAAGAGACCCTGTCTCAGAGTGGAAGGTCAGGTCCAGCACCCAAGGTTGTCCTCTGACCTCTGTAGGTGTGCTGTGGCACCTGTGTTCCCACGAGCACACGCATGGATGAACATACACATGTACATACACAAGACACACAGATTTTAAAAACACATCCAACAAAGGTGATTAGAAAATTTGTCTTTGTACAGTATAATTATATGCAACTATCTGTGTGTAGTATGTGTGGTGTGCACATGTGCCTTCATGTTTCTTGTCTGCATTCGGGTGCTCATGTGCATGGGTGTGTGTGGACACTCGTGCACATGCGTTTGGAGGCCTCAGTCATACTTGATCATTTTCCACCGTATGCAATGGGACAGGGTCTCTGAGTTAAGCTCAAAGCTTGCCTGCATGGCTAGTCTTCCCAGCCAGCTTTTTCCAGGGACCCCTGGCTCCACCGTTTGAGGCTGGAGTGATAGGCATGCTGCTGTGTGTGCCCGCCTTTCCAGTTAACTTCGGAAATACAGACTCCCTACCCTGGCTTCCTTGCTACTTCAGTGGTTTCTAGAAATGACTTGCCATGTATTTATAGAAATGGCTCGTTATTCACAGACAAGGCAGATTTCACTCGTTTAAAGTGTGACCATTGTCTCTGGTGGTAGTGGTGTGCACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATCTCTGTGAGTTCAAGGCCAGCTTTATCTAAGGAGCTAATTCTAGGATAGTCATGGCTACAAAGAGATCCTGTCTCAAAAAAAAAAAAAAACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGTGTGACCATAAATGGGTTCAGAGCTCAGCCACTGGAATAGCTGGTCTCCCTATATGGGGAGAAAGAGCTAGACACATTTCAGGGAATGGTGTCAGGAGCCCCAAGAGCTTGGGGACGCTGACTTGTTTGAAGGGGGCTCAGTGGGAGTCTGAATGGGGTAATCAGGGGGTCTCTGGGAACGTTTGTCCTGTCATTTGATCTCACATTTTTGGGTCCCTGCTCAGAGCCCCTTAGTGTATCCTGGGTGCATCCTTTTGAGGTCTGGTCGAGATCACCGCCTATGAATCCTTCTCTCCTGGCTTCCTGCCGTTTCCACTACAG
Seq C2 exon
GTAGCAGTGGTGGGAATGAGAGGCAGGAGGAAGAGGAGGTTCAGGAGGGGCGCAGCCATCCACAGCAGCCAGCGCTGGCAGCCTCAGTCGGGGTCAGTAACTATGTCTACTATATCGAGGCAGAGCAGCAGGAACCACAGGACTTGCGAGTGCACCGATTAAAGCGTCGGTCAGAGCCGGAACAACAGCTGGGGCACAAGCAGTTGCAAGAGCAGCAATCTCAGCCTCAACTGTTAGGATCCCAGCCAGAATTGCAGCAGCAGCAGCAGCATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGATGGGCAACAGCAGCTGTCTCCACCACAGCAAGAACGACAGGAAGACCGGTCCATGCGGCATCATCAACCACAACCACAGCTGCAGGCGGTGCAGCTGCCGAGACTTGGACAAGAGCAGCATCTGTTGCTGCAGCAGCACCAGACGAGGCAGCCTCCAAACCAAGCACAACAGCCGTTTCCACAGCAGCAGGAACAGCAGCAAATCCAACAGCAGCATCTTGTGCAGCAGCAAATGCATGAGCCTGCGCCACAGCAGCAAGTGCAGGAACAACACCAGTCACAGCAGCAGCAGCTTCTCCAACAAGAGCAGCTGTTGCAAGAGCAGAGGCAATTGCTGCTGCAGCATGTGCAAGATCAAGCATTGCAGTTACAGCAAGTGCAAGAGCAACAGCTGTTGCAACAGGAGCAGTTGCAGCAGCTGCTGTTCCAACAGGAGCAACTGTTGCAGCAACAGGCACACTTGCAACAGCAACACTTGCAGCAACAGGTATTGGTGCTACAGCCACAGGGACAGCTACAGCAGCAGCTGTTGCTACAGCAGCAACAGGCACACTTGCAGCAGCAGCTGTTGCAGCAGCAGGAACAGCTGCAGCAGCAACAGCGGCACCAGCAGCTGCAGCCTCCTCCACTGGAGCCAGAGGAAGAAGAGGAGAAAGAGGAGGAGGGAGTGGAACTGGAACTCATGCCTGTGGACATCAGATCTGAGCAGGAGCTGGAGAGGCTGCAGGAACAGCGGCAGCTGCAGCTAAAATTGCAGGAGCAGCTGCGTCAGCTGGAGGAGCACCTGGAGCAGCAGCAGCAGATGGAGCAGCTGCAGCTGCAGCAGATGGAGCAGCTGGAGCAGCTGCAGCAGCAGCAGCAGCAGATGGAGCAGCTGCAGCTGGAGCAACAGGAGGTGCACCTGGAGCTGACCCCGGTGGAACTAGACGCCCAGCAGGAGGAGCTGCAGCTGGAGCTGACTTCTGTGCAGCCGGAGCTGCAGCTGGAGCTGGTGCCCACTCCGGGGATTGCAGCACCGGCTTCAGCCACCGTCGTGGTGGCCCCTCCAGGTTATGTGGTGCTGCAGGAGGTCATGGTGCTGCCCTCTGTGGCCACACCCACTGTGGTGGCCATTCCGGGGCCCGCGGGGAGTGCGGCTCTAACTCCCGCCAGACAGCGGAGGAAGCGGCGAGTCCGGAACAGGCCGACCGTCTGTGGGGAATGTGGCAAGGGTTTCAGCCGCAGCACGGACCTGGTGCGACACCAGGCCACGCACACTGGGGAGAGGCCGTATCTCTGCAGCGAGTGCGGAAAGAGCTTCTCGCAGCATTCCAACCTAGTGACCCACCAGCGTATCCACACGGGCGAGAAACCCTACGCCTGCACCTACTGCTCCAAGCGCTTCAGCGAGAGCTCGGCGCTCGTGCAGCATCAGCGCACCCACACCGGAGAACGGCCCTACGCCTGTGGCGACTGCGGCAAGCGCTTCAGCGTCTCCTCCAACCTGCTGCGCCACCGCCGCACCCACTCGGGTGAGCGGCCCTACGTGTGCGAGGACTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030579:ENSRNOT00000074138:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]