MmuALTD1037123-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000093910 | Zfp853
Description
zinc finger protein 853 [Source:MGI Symbol;Acc:MGI:2685638]
Coordinates
chr5:143287038-143292344:-
Coord C1 exon
chr5:143292227-143292344
Coord A exon
chr5:143292215-143292226
Coord C2 exon
chr5:143287038-143289778
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TCCTGCCATTTCCACTACAGGTG
3' ss Score
9.94
Exon sequences
Seq C1 exon
CCTGCTCCGGGAGACCCTGGTGTGACCGCCAGGATGGAGCTGGGCCCAGCAACCCAGACCTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAG
Seq A exon
GTGAGGGTTGAG
Seq C2 exon
GTGGCAGTGGTGGGAAGGAAAGCCAGGAGGAAGAAGAGGTCCAGGAGGGGAGCAGCCACCCACAGCAGCCAGTGCTTGCAGCCTCATTCGGGGCCTATTACTATATTGAGCCAGAGCAGGAGGAACCGCAGGACTTGCGAGTGCACCGAGTTAAGCAGCAGCCAGAGCAGAAACGTCAGCCCGAGCACAGGCAGTTGCAAGAGCAGCAACCGCAGCATCAGCTGTTAGGATCCCAGCCAGAATCGCAGCAGCAGCAGCAAGATGGACAACAGCAGCTGTCTCCGCCCCAGCAAGAACAGCAGGAAAACTGGCCCATGCAGCACCAGCAACCAAAACCACAGCTGCAGGTGGTGCAGCTGCCAAGACTTGGACAAGAGCAACATTTATTGCTGCAGCAGCACCAGATGATGCAGCTTCCACACCAAGCACAACAGATGTTTCAACAGCAGCAGGAACAGCTGCAACTGCAGCAAATTCAACAGCAGTATCTTGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000093910-2-9,3-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACCTTTGTGTTGGAGC
R:
GACCTCTTCTTCCTCCTGGCT
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types