RnoALTA0001434-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13656152-13657305:-
Coord C1 exon
chr10:13657101-13657305
Coord A exon
chr10:13656351-13656371
Coord C2 exon
chr10:13656152-13656350
Length
21 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCCCCCTCCCCTCTCTTAAGTTG
3' ss Score
7.71
Exon sequences
Seq C1 exon
GGGCCCTAAAGGACACTACCTTGTGGTCAACTTCCTTTTTGGAATAGCTTTTCTGTCAAGCTCTTTCTCCATCTTGACGGTCGGAGAGAAGAGCATTAAGTCCAAGAACCTCCAGTTCCTCAGCGGAGTCAGCATGGCTGCGTTCTGGCTCTCCGCTCTGCTGTGGGACCTCATCTCTTTCCTTGTTCCCACTCTGCTGCTGGTG
Seq A exon
TTGGTGTTTTTTTGGTACAAG
Seq C2 exon
GAAGAAGCTTTTGCACACCCCCAGAGCATCCCGGCGGTGGTCTTGATAATGATGCTGTACGGCTGGGCTATCATCCCTTTGGTCTACACAGTCAGTTTCTCTTTTAAAACCCCTGGTAGCGGGTGCGTGAAGCTCGTGGCAATGCTCACCTTCCTGAGCATCAGCCCTGTGGTCCTCGTCACTGTCACAAGTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-33-32,33-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGTGGGACCTCATCT
R:
TCATTATCAAGACCACCGCCG
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]