RnoINT0010158 @ rn6
Intron Retention
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13656152-13657305:-
Coord C1 exon
chr10:13657101-13657305
Coord A exon
chr10:13656372-13657100
Coord C2 exon
chr10:13656152-13656371
Length
729 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCCCCCTCCCCTCTCTTAAGTTG
3' ss Score
7.71
Exon sequences
Seq C1 exon
GGGCCCTAAAGGACACTACCTTGTGGTCAACTTCCTTTTTGGAATAGCTTTTCTGTCAAGCTCTTTCTCCATCTTGACGGTCGGAGAGAAGAGCATTAAGTCCAAGAACCTCCAGTTCCTCAGCGGAGTCAGCATGGCTGCGTTCTGGCTCTCCGCTCTGCTGTGGGACCTCATCTCTTTCCTTGTTCCCACTCTGCTGCTGGTG
Seq A exon
GTGAGTACCTGGCAGGGCTGACATCATGTCCTGCAGACCAGGGTCTTCCCTGAAAGAACCACCTGCCGAACCAGAACCGGCTGAGAAGTTCAGTTGGTAGCTCAGCCCTGACTGGAACAGGAAGGTCTTTTAGCCCTGATATCTTCAGGCACTGGGTACCTTGTGCACTGGTGTCTGTGTAGCCCTCACAGAGCTGCTGCCCCAGGTCAGGGAGACAGGTTTTGGAGACATGTATGTATCGTTCAGAAGTAGATAGTCAGAGAACCGAGGATGAAGTACTTGGTTGTGGCGGAACCAGCCTGATTACTTTGTGCAGAGTGGATCACCTCCTGCCTTGTCTGGTGTGTTTTATAAGCATCTCCCCATCTTTTGCTGTGCTGCTCTGTCACTGATAACCAGGGCAGCTCCCCGAGAGCATGTCTCAGGGCTTGCTCATTAGCTTGTGAAGGTTTCTTAGCGCCTTGCTTTAAAAACCTAAGCTCATGGGCTTGTGAGATAGCTCTGCCCATAAAGGCACTTGCTCACGGGCCTTGTGACCTGTTTAATCCCTGGGTCATAAAAGGTGGCGGGAAGAACCCACCCTAGAGAATGGTCCTTTGTCCTCCCACGAGCAATGGCTCCATCCCCCACGAGTACATAAAGTACTTAACACTGAAATCACTGTATTCTCAGCACTTGGCGTGGACCCTCACTGACTTTTCCAAATTCTTCCCCCTCCCCTCTCTTAAG
Seq C2 exon
TTGGTGTTTTTTTGGTACAAGGAAGAAGCTTTTGCACACCCCCAGAGCATCCCGGCGGTGGTCTTGATAATGATGCTGTACGGCTGGGCTATCATCCCTTTGGTCTACACAGTCAGTTTCTCTTTTAAAACCCCTGGTAGCGGGTGCGTGAAGCTCGTGGCAATGCTCACCTTCCTGAGCATCAGCCCTGTGGTCCTCGTCACTGTCACAAGTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656:ENSRNOT00000060818:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCATCTTGACGGTCGGA
R:
TTGTGACAGTGACGAGGACCA
Band lengths:
352-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]