BtaINT0006684 @ bosTau6
Intron Retention
Description
uncharacterized protein LOC777692 [Source:RefSeq peptide;Acc:NP_001071620]
Coordinates
chr25:1921645-1922596:+
Coord C1 exon
chr25:1921645-1921849
Coord A exon
chr25:1921850-1922376
Coord C2 exon
chr25:1922377-1922596
Length
527 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTCTGCCCCACTTTCCCCAGGTG
3' ss Score
10.55
Exon sequences
Seq C1 exon
GGGCCCTAAAGGACATTATCTTGTCATCAACTTGCTTTTTGGAATGGCTTTCCTTTCGAGTTCCTTTTCCATCTTGACAGTCAAGGAGAGAGGCCTCAAGGCCAAGCAGGTCCAGTTCATCAGCGGCGTCCACGTGGCTACGTTCTGGCTCTCGTCTCTGCTATGGGACCTCCTGTCCTTCCTTGTCCCCAGCCTGCTGCTGCTG
Seq A exon
GTGAGCTGCATTGTGAGGGGCCCCTCCCCCCAACCCCCTGTGTCCAGGGGACTGGCCTTGGGGCCCCTGCAAAGAACCGGGACCCAACCAGAAGTCTAGGCTGGCAGCTCTGCCCCTGATGGGCCACGTGGCTGTTAACGCAGCTTCCTCACTGACCCTCAGTAAGAGGTGATTCCCGTCCCAGCGTCATTAGGAGCAGGGGGCCTGCTCTGGGGTCTCTAGGTGGTGACTTCCCCAGAGCTGCTGCCTCAGGATGGTAAGACAGTGCCCTGGGGACAGGTGTAGCCCACCAGGGCACGAGCGGTGCAGCCTGGAACATGTCCTCCCTGGTTCTGCCTCTGTGCTCCTCATCTCACTGCACTGGTGTCCTCTGCGCGGCCAGAGGAGTGAGGGAAGGGCGGTGCTGCTGCAGTCCTGCCAACACCTTGTTTACCTTATTAAGAATAACTTGAGATTATCGTATCCTTTCTCTCGTGCTTAGGGCTGACTCTTAGTGACTTTTCCAAATTCTGCCCCACTTTCCCCAG
Seq C2 exon
GTGGTATTTCTATACTACGATGAGGAGGCTTTTACACACAAGGAGAATGTCCGAGCTGTCTTCTTGATGCTGATGCTCTATGCCTGGGCCATCATCCCCTTCATCTACCTGACCAGCTTCTGCTTTGAGAATGCGGGGAACGCCTGTGTCAAACTCATCATCATGCTGACCTTTCTGAGCATTGGCCCCTTTGTTCTTGTCTCGGTCACAAGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034643:ENSBTAT00000037495:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTCCTTTCGAGTTCCT
R:
AAGGGGCCAATGCTCAGAAAG
Band lengths:
352-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]