RnoALTA0001475-5/7 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13778390-13778982:+
Coord C1 exon
chr10:13778390-13778560
Coord A exon
chr10:13778792-13778909
Coord C2 exon
chr10:13778910-13778982
Length
118 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
GACCTCCACCCTTTCCCCAGTAT
3' ss Score
6.94
Exon sequences
Seq C1 exon
TGGTGGTAACAAGCGCAAGTTAAGCACTGGCATCGCCCTCATTGGAGAGCCTGCAGTCATCTTCCTGGATGAGCCATCTACTGGCATGGACCCCGTGGCCCGGCGCCTACTCTGGGACACTGTAGCCCGGGCCCGAGAGTCTGGCAAAGCCATTGTCATCACCTCCCACAG
Seq A exon
TATGGAGGAGTGTGAAGCCTTATGTACCCGGCTGGCCATCATGGTACAGGGCCAGTTCAAGTGCCTGGGCAGCCCACAGCACCTCAAGAGCAAGTTTGGCAGCGGCTACTCCCTGCAG
Seq C2 exon
GCCAAGGTCCGGAGTGAGGGGAAGCAAGAAGTACTAGAGGAGTTCAAGGCATTTGTGGACCTGACCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-42-53,42-52,42-51,42-50,42-49,42-48,42-47-5/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(18.6=46.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGCAAGTTAAGCACTGG
R:
TGGGAAGGTCAGGTCCACAAA
Band lengths:
234-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]