RnoALTA0001496-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12761196-12762341:-
Coord C1 exon
chr7:12762194-12762341
Coord A exon
NA
Coord C2 exon
chr7:12761196-12761268
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCGCTCTGTTTCCGGTTCAGAGT
3' ss Score
8.65
Exon sequences
Seq C1 exon
GGCCGGGAGGAGCGAAGGTGGATGGAGTTTGGGGGCCTCAGGACGGTGAGAAAATCCCCGAGAGGGTGGAAGGTAGAGCCTAAAGAACTGGGGATGCCGTGGGGCAAGGATTGGCGGAGCCACGTTCCCTGGTAATTTGGGATTCCAG
Seq A exon
NA
Seq C2 exon
AGTCATCATGGCTTTCTGCACACAGTTGATGCTCCTACTGTGGAAAAATTACACATATCGACGGAGACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-2-2,2-1,2-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGGAGCGAAGGTGG
R:
CGGTTGTCTCCGTCGATATGT
Band lengths:
218-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]