RnoALTD0001235-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12761196-12762397:-
Coord C1 exon
chr7:12762297-12762397
Coord A exon
chr7:12762194-12762296
Coord C2 exon
chr7:12761196-12761268
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCGCTCTGTTTCCGGTTCAGAGT
3' ss Score
8.65
Exon sequences
Seq C1 exon
GGCGTCGTCCGCGGTTGAGCCGGGTTCCTCTTAAAGGGGCCGCGCACCCCCGCCGAGGCCGGGAGGAGCGAAGGTGGATGGAGTTTGGGGGCCTCAGGACG
Seq A exon
GTGAGAAAATCCCCGAGAGGGTGGAAGGTAGAGCCTAAAGAACTGGGGATGCCGTGGGGCAAGGATTGGCGGAGCCACGTTCCCTGGTAATTTGGGATTCCAG
Seq C2 exon
AGTCATCATGGCTTTCTGCACACAGTTGATGCTCCTACTGTGGAAAAATTACACATATCGACGGAGACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-0-2,1-2,2-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAGCCGGGTTCCTCTTA
R:
CGGTTGTCTCCGTCGATATGT
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]