RnoALTA0001502-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12750284-12750599:-
Coord C1 exon
chr7:12750507-12750599
Coord A exon
chr7:12750350-12750411
Coord C2 exon
chr7:12750284-12750349
Length
62 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCTGGTGCTGGACCCCCAAGCCC
3' ss Score
-1.2
Exon sequences
Seq C1 exon
GTGGTGACCCCAGACAGCAGCAGCACCTTCTCACAGCCACTCCGCAGCCCCACACAGGGCCAGAGGCATCGGTTCTGGAGAATGGGGAGCTGG
Seq A exon
CCCCAAAAGGCTCTGCACCCACCACTGCCCAAGTGCAAGGCTGGACACTCACCTGCCAACAG
Seq C2 exon
CTCCGGGCTTTGCTCCACAAGCGTTTTCTGCTCGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-34-41,34-40,34-39-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTCTCACAGCCACTC
R:
CTGTGCAAACAGGCCCCG
Band lengths:
137-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]