RnoALTA0002014-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130546771-130547613:+
Coord C1 exon
chr7:130546771-130546916
Coord A exon
NA
Coord C2 exon
chr7:130547595-130547613
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCTTCTGGACAGGGGGACAGTGG
3' ss Score
-7.35
Exon sequences
Seq C1 exon
CCCCCAGACCATCACCTGTCCTGATGGAGGCCCGCGTGGATCTCATTGACCTCGACCTGTGTAACTCCACCCAGTGGTACAATGGGCGTGTCACATCAACTAATGTGTGCGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
Seq A exon
NA
Seq C2 exon
TGGTGGGCCTCTCATGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762-8-9,8-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.178
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTACAATGGGCGTGTCAC
R:
GCACATGAGAGGCCCACCA
Band lengths:
92-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]