RnoINT0012286 @ rn6
Intron Retention
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130546771-130548356:+
Coord C1 exon
chr7:130546771-130546916
Coord A exon
chr7:130546917-130547586
Coord C2 exon
chr7:130547587-130548356
Length
670 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCCTCTGTCCTTCTGGACAGGGG
3' ss Score
10.44
Exon sequences
Seq C1 exon
CCCCCAGACCATCACCTGTCCTGATGGAGGCCCGCGTGGATCTCATTGACCTCGACCTGTGTAACTCCACCCAGTGGTACAATGGGCGTGTCACATCAACTAATGTGTGCGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
Seq A exon
GTAACTTCCTTCTGGTACCCCAGACCCTTGGGGTCCCTCTTGGGATCCTACCCCACCCCCTGAGGAAAACCTCATTTTAAGTTCCGGATCTCCATCCTCTCCTCCCTTGACCCCAGGGCCAGCAGCTCCAGTGACTTGGGATAGTGTCTGCCATCTGTTCCTACTGAGAACATGTCGTCACACTTAGCATCTGACCCCAACATTAGCATACAGAACACATTGCCCCAAACCGGTCCTCTTTTTTTTTTTGCATTTTTTATTGGATATTTTTAATTTACATTTCAAATGTTATTACCTTTCCTGATTTCCCGTCCATAAGCCCCCTATCCCATCCCCCTCCCTTTCTGCTATAAGGGTCAAACTGGCTCTTGAAGACAATGCTTTTCTCTTCCCCATAACACCAAGCTCCCAGAGCCACCAGTGTTCACGCATGCACGTAAAGCCACATGCATGTCTTTGTACGCTCATCTTATAGCAAGGCGTCTCAGGACCCCTTCCCCACCCACCCTCCGCATCCCAACGTATATTTGCAACACTCAACCTTACCAGTTGAGTCTAAGGCAGGCAGGAAACTATGTGGCCGCTGGCATTGTTCTCCCATAGCCCCATGAGCCTTCTGGGAAGGGAGAGTGGTTCAGGCTGAAAGTGACCCCTCTGTCCTTCTGGACAG
Seq C2 exon
GGGGACAGTGGTGGGCCTCTCATGTGCAGAGACAGCGTCGACAGCCCCTTTGTGATCGTGGGGATCACGAGCTGGGGGGTAGGCTGTGCCCGTGCTAAGCGTCCTGGAGTCTACACAGCCACCTGGGACTACCTGGACTGGATTGCTTCCAAGATCGGCCCTACCGCCTTGCACTTGATTCAACCGGCCACCCCTCACCCACCTACAACCCAGCAACCGGTCATCTCTTTCCACCCTCCTTCGATCCACCCTCCTTGGTACTTCCAACACCTGTCTCCTCGGCCGCCTCACCTACGACCGCCTCGGCCTCTGCTCCATCAGCCGTCTTCAGTCCATACCTCCTCAGCTCCAGTCATACCTCTACTCTCCCTGCTCACCCCAGTCCAGCCTGTGTCCTTTACCCTTGCTGCGTACCACACAAGGCACCACACAACGCTGTCTTTTGCTCGGCGTCTACAGCATCTCATAGAGGCCCTGAAGATGAGAACTTACCCTATAAAATATCCCTCCCGGTACAGTGGACCTGTGAACTACCAGCACCGCTTCTCCACGTTCGAGCCCCTTTCCAACAAACCCAGTGAGCCCCTCCTCCATTCCTGAGAAAAGAGAAAAGAGTGAAATACACACACACACACACACACACACACACACACACACACACACACGAGGACATGCTTTCTGGACTTCTGTTTTCTCCAACTCAACCCAAATCTTCCTCCATCAAATCTACGTCCTCCCTCCTCAGCTCCAATAAAATGGAATTTCTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762:ENSRNOT00000045647:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=23.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGTAACTCCACCCAGT
R:
AAGGAGGGTGGATCGAAGGAG
Band lengths:
348-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]