HsaINT0002792 @ hg19
Intron Retention
Gene
ENSG00000100312 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:126]
Coordinates
chr22:51182489-51183727:+
Coord C1 exon
chr22:51182489-51182634
Coord A exon
chr22:51182635-51183080
Coord C2 exon
chr22:51183081-51183727
Length
446 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTCTGTGTCCTTCTGGACAGGGA
3' ss Score
9.32
Exon sequences
Seq C1 exon
CCCCCAGGCCATCATCTATACTGATGGAGGCACGTGTGGATCTCATCGACCTGGACTTGTGTAACTCGACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTGTGCGCGGGGTATCCTGTAGGCAAGATCGACACCTGCCAG
Seq A exon
GTAACCTTCCTTCTGGCTTCTGGGCCCCTGGGTCCCTCCAGGACTCTCCCGGCCCCTGAGAACATCCTCCTTTTGGATCCCCAAGCTCCACTATCTCCACTGCTCTGCCCAGGGCCCTTCTCTAGTGACTGCTTCCCCGGTCCCTTTTCTAGCACCTACTCTCACAGTGGGGATGAGCGGTGACAGCCACCGGCTGCCCCTGCCATGTGCCCCTGTGGACACGTGGGTTTGCTCATCTCACTGCAAGGAAAGCCCTGACAATTCACACCCTCCTCACATCCCAAATGAAGCCCCTGACACCCCCTCAAACTTTACTACAACCACTTGTGTTTACAGCAGCAGGAGACCATGTCACTGTGGAAATTGTCCTCCCAGAGCCTTCCGACCCCTCTGGGCAGGGGAAGAGTGGCTCAGGCAGATAGTGACCTCTGTGTCCTTCTGGACAG
Seq C2 exon
GGAGACAGCGGCGGGCCTCTCATGTGCAAAGACAGCAAGGAAAGCGCCTATGTGGTCGTGGGAATCACAAGCTGGGGGGTAGGCTGTGCCCGTGCCAAGCGCCCCGGAATCTACACGGCCACCTGGCCCTATCTGAACTGGATCGCCTCCAAGATTGGTTCTAACGCTTTGCGTATGATTCAATCGGCCACCCCTCCACCTCCCACCACTCGACCGCCCCCGATTCGACCCCCCTTCTCCCACCCTATCTCTGCTCACCTTCCTTGGTATTTCCAACCGCCCCCTCGACCACTTCCACCCCGACCACCGGCAGCCCAGCCCCGACCCCCACCTTCACCCCCGCCCCCACCCCCACCTCCAGCCTCACCTTTACCCCCACCCCCACCCCCACCCCCACCTACACCCTCATCTACCACAAAACTTCCCCAAGGACTTTCTTTTGCCAAGCGCCTACAGCAGCTCATAGAGGTCTTGAAGGGGAAGACCTATTCCGACGGAAAGAACCATTATGACATGGAGACCACAGAGCTCCCAGAACTGACCTCGACCTCCTGATCTGACCTGGTTCTCAACAGACCCAGTGAGCCCTTCACTCCTGAGAAAAAGGAAAGATGAAATAAATAAATAAACATATATATATAGATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100312-ACR:NM_001097:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.636
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=25.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGTAACTCGACCCAGTGG
R:
ACCAAGGAAGGTGAGCAGAGA
Band lengths:
358-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)