MmuINT0010071 @ mm10
Intron Retention
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89573119-89574585:+
Coord C1 exon
chr15:89573119-89573264
Coord A exon
chr15:89573265-89573831
Coord C2 exon
chr15:89573832-89574585
Length
567 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCCTCTGTCCTTCTGGACAGGGG
3' ss Score
10.44
Exon sequences
Seq C1 exon
CCCCCAGGCCATCACCTGTCCTGATGGAAGCACGTGTGGACCTCATTGACCTCGACCTGTGTAACTCAACCCAGTGGTACAATGGGCGTGTCACATCGACTAATGTGTGTGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
Seq A exon
GTAACTTCCTTCTGGTACCCCAGACCCCCTGGGTCCCTCCAGGGATCCTAGCCCCTGAGAGCTCATCTTAAGTCTCCAATCTCCATCTTTTCCTTCTCCTTTCTTGCCCGAGGGCCAGCAACTCCAGTGACTTGTTCCCTGGTACCTCTCCTTGACACCCACCATCACAATAGTATGGTGTTCCTACTGAGAACATGTCATCACACGTGGCATTTGACCCCAACATTAGCATACAGAACACATTGCCCAAACCTGGTCCTTGAGAGACGGTGCTTTTCTTTTTCCCATAACGCAAAGCGCCCAGAGCCACCAGTGTTCATGCATGCAGGTAAAGCCACATGCATGCATTTGTGCCCTCATCTTATTGCAAGGCACCTCAGGGCCCCTCCCCCACCCGCCCTCCACATCCCAACGGATGTTTGCAGCTCTTACCCTCACCAGTTGTGTCTTAAGGCAGCAAGAAACTATGTGGCTACAGACATTTGTTCTCCCATAGCCCCATCCATGAGTCTTCTGGGAAGGGAGAGTGGTTTAGGCTGAAAGTGACCCCTCTGTCCTTCTGGACAG
Seq C2 exon
GGGGACAGTGGTGGGCCTCTCATGTGCAGAGACAACGTCGACAGCCCCTTTGTGGTCGTGGGGATCACGAGCTGGGGGGTAGGCTGTGCCCGTGCTAAGCGTCCCGGAGTCTACACAGCCACCTGGGACTACCTGGACTGGATTGCTTCCAAGATCGGCCCTAACGCCTTGCACTTGATTCAGCCAGCCACCCCTCATCCGCCGACTACCCGCCATCCGATGGTCTCTTTTCACCCTCCTTCTCTTCGCCCTCCTTGGTATTTCCAACACCTGCCTTCTCGACCGCTTTACCTGCGACCACTACGGCCTCTGCTCCATCGGCCGTCTTCGACCCAAACCTCCTCATCACTCATGCCCCTCCTCTCGCCCCCAACCCCAGCCCAGCCTGCATCCTTTACCATTGCTACACAACACATGAGGCACCGCACAACGCTGTCTTTTGCTCGGCGTCTCCAGCGCCTCATAGAGGCCCTGAAGATGAGAACTTACCCTATGAAACATCCCTCCCAGTACAGTGGACCAAGGAACTACCACTACCGCTTCTCCACGTTTGAGCCCCTTTCCAACAAACCCAGCGAGCCCTTCCTCCATTCCTGAGAAAAGAGAGATGAGTGAAATAAAGTATATATTTGTATATAAATATATATGTACACTCGAGGACATGAACTTCTGTTTTCTTCAACTCAACCCAAATCTTCCTCCATCAAATTTACATCCTCCCTGCTCAGCTCCAATAAAATGGAATTGCTCAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622:ENSMUST00000023295:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=23.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAATGGGCGTGTCACATCG
R:
CGAGAAGGCAGGTGTTGGAAA
Band lengths:
350-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types