MmuALTA1010461-5/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89573119-89574119:+
Coord C1 exon
chr15:89573119-89573264
Coord A exon
chr15:89573832-89574018
Coord C2 exon
chr15:89574019-89574119
Length
187 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCCTCTGTCCTTCTGGACAGGGG
3' ss Score
10.44
Exon sequences
Seq C1 exon
CCCCCAGGCCATCACCTGTCCTGATGGAAGCACGTGTGGACCTCATTGACCTCGACCTGTGTAACTCAACCCAGTGGTACAATGGGCGTGTCACATCGACTAATGTGTGTGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
Seq A exon
GGGGACAGTGGTGGGCCTCTCATGTGCAGAGACAACGTCGACAGCCCCTTTGTGGTCGTGGGGATCACGAGCTGGGGGGTAGGCTGTGCCCGTGCTAAGCGTCCCGGAGTCTACACAGCCACCTGGGACTACCTGGACTGGATTGCTTCCAAGATCGGCCCTAACGCCTTGCACTTGATTCAGCCAG
Seq C2 exon
CCACCCCTCATCCGCCGACTACCCGCCATCCGATGGTCTCTTTTCACCCTCCTTCTCTTCGCCCTCCTTGGTATTTCCAACACCTGCCTTCTCGACCGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622-5-13,5-12,5-11,5-10,5-9-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=23.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATCACCTGTCCTGATG
R:
AAGCGGTCGAGAAGGCAGG
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types