BtaINT0012979 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010182 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:HGNC:126]
Coordinates
chr5:120228228-120229232:+
Coord C1 exon
chr5:120228228-120228373
Coord A exon
chr5:120228374-120228895
Coord C2 exon
chr5:120228896-120229232
Length
522 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTCTGTATCCTTCTGGGCAGGGG
3' ss Score
7.06
Exon sequences
Seq C1 exon
CCCGCAGGACATCACCTGTGCTGCAGGAGGCGCATGTGGACCTTATCGACCTCGACTTGTGTAACTCGACCAGATGGTACAATGGGCGCATTCGTTCAACCAATGTGTGCGCAGGGTACCCTGAAGGCAAGATTGACACCTGCCAG
Seq A exon
GTAACTCTCCACCGGGTGCGCTCGTGGACACTTCCTTTCTGGATCCCTGAGCAAACCTCCCTGGTCCTGTCTTCCACTGCCTGTAGTCACTATGTGCTTGGGTGGTGACACGCATACGCTGCCCAACAAAGACTCAGTCACCATAGGTAGAGCTTTCTTCCACCCTCACACAGAGATCATATCCTCCGAACACTGCCCAGAAGAGAACATTTACCTCTCTTCACCAGAACACAAAAGGGTCCAATCCACTTGCACACACACGTTCATGTCCCCACGTAAAACCGTGCACAGACACATGGGTTTGTCTGTCCTCCCCATCAGCGCAAGAAAACCCATGGAATCCCTCCCCTTCTCACAGCCCCAGAGAAGTTGTTGGCACCACCTCAAACTCTGCCATAACTGCCTGTGTTCATGGCAGCAGGAGGCCATGTGACTGCAGAAATGACCTGCCCAGAGGCCACGGCCCTTCTGGGCAGGGAGCGTGGCTCAGGCAGAGCGTGACTTCTGTATCCTTCTGGGCAG
Seq C2 exon
GGGGACAGCGGCGGGCCTCTCATGTGCAAAGACAGCGTGGAAAACAGCTATGTGGTCGTGGGAATCACAAGCTGGGGGGTAGGCTGTGCCCGAGCTAAGCGCCCCGGAGTCTACACGTCTACCTGGTCCTATCTGAACTGGATTGCCTCCAAGATAGGCTCTAACACGGTGCACATGATTCAGTTGCCCACCGCTCCCCCTGCTTCTACTCCAGCAGCCCAAGCGAGCCCTGGCTCCGTTCAGCCTTCCATTCGCCCACCTTGGTTCTTCCAACACGTTCCTCAACCACCTCCCTCTCAGCAAGCTATTGCCGTGGCCTCAACCGCTCACGTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010182:ENSBTAT00000013434:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.354
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=41.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAACCAATGTGTGCGCAG
R:
AGAGGGAGGTGGTTGAGGAAC
Band lengths:
350-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]