MmuINT0010071 @ mm9
Intron Retention
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89403550-89405015:+
Coord C1 exon
chr15:89403550-89403695
Coord A exon
chr15:89403696-89404262
Coord C2 exon
chr15:89404263-89405015
Length
567 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCCTCTGTCCTTCTGGACAGGGG
3' ss Score
10.44
Exon sequences
Seq C1 exon
CCCCCAGGCCATCACCTGTCCTGATGGAAGCACGTGTGGACCTCATTGACCTCGACCTGTGTAACTCAACCCAGTGGTACAATGGGCGTGTCACATCGACTAATGTGTGTGCAGGGTATCCTGAAGGCAAGATTGACACCTGCCAG
Seq A exon
GTAACTTCCTTCTGGTACCCCAGACCCCCTGGGTCCCTCCAGGGATCCTAGCCCCTGAGAGCTCATCTTAAGTCTCCAATCTCCATCTTTTCCTTCTCCTTTCTTGCCCGAGGGCCAGCAACTCCAGTGACTTGTTCCCTGGTACCTCTCCTTGACACCCACCATCACAATAGTATGGTGTTCCTACTGAGAACATGTCATCACACGTGGCATTTGACCCCAACATTAGCATACAGAACACATTGCCCAAACCTGGTCCTTGAGAGACGGTGCTTTTCTTTTTCCCATAACGCAAAGCGCCCAGAGCCACCAGTGTTCATGCATGCAGGTAAAGCCACATGCATGCATTTGTGCCCTCATCTTATTGCAAGGCACCTCAGGGCCCCTCCCCCACCCGCCCTCCACATCCCAACGGATGTTTGCAGCTCTTACCCTCACCAGTTGTGTCTTAAGGCAGCAAGAAACTATGTGGCTACAGACATTTGTTCTCCCATAGCCCCATCCATGAGTCTTCTGGGAAGGGAGAGTGGTTTAGGCTGAAAGTGACCCCTCTGTCCTTCTGGACAG
Seq C2 exon
GGGGACAGTGGTGGGCCTCTCATGTGCAGAGACAACGTCGACAGCCCCTTTGTGGTCGTGGGGATCACGAGCTGGGGGGTAGGCTGTGCCCGTGCTAAGCGTCCCGGAGTCTACACAGCCACCTGGGACTACCTGGACTGGATTGCTTCCAAGATCGGCCCTAACGCCTTGCACTTGATTCAGCCAGCCACCCCTCATCCGCCGACTACCCGCCATCCGATGGTCTCTTTTCACCCTCCTTCTCTTCGCCCTCCTTGGTATTTCCAACACCTGCCTTCTCGACCGCTTTACCTGCGACCACTACGGCCTCTGCTCCATCGGCCGTCTTCGACCCAAACCTCCTCATCACTCATGCCCCTCCTCTCGCCCCCAACCCCAGCCCAGCCTGCATCCTTTACCATTGCTACACAACACATGAGGCACCGCACAACGCTGTCTTTTGCTCGGCGTCTCCAGCGCCTCATAGAGGCCCTGAAGATGAGAACTTACCCTATGAAACATCCCTCCCAGTACAGTGGACCAAGGAACTACCACTACCGCTTCTCCACGTTTGAGCCCCTTTCCAACAAACCCAGCGAGCCCTTCCTCCATTCCTGAGAAAAGAGAGATGAGTGAAATAAAGTATATATTTGTATATAAATATATATGTACACTCGAGGACATGAACTTCTGTTTTCTTCAACTCAACCCAAATCTTCCTCCATCAAATTTACATCCTCCCTGCTCAGCTCCAATAAAATGGAATTGCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622-Acr:NM_013455:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=23.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAATGGGCGTGTCACATCG
R:
CGAGAAGGCAGGTGTTGGAAA
Band lengths:
350-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: