HsaINT1002649 @ hg38
Intron Retention
Gene
ENSG00000100312 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:HGNC:126]
Coordinates
chr22:50744061-50745334:+
Coord C1 exon
chr22:50744061-50744206
Coord A exon
chr22:50744207-50744652
Coord C2 exon
chr22:50744653-50745334
Length
446 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTCTGTGTCCTTCTGGACAGGGA
3' ss Score
9.32
Exon sequences
Seq C1 exon
CCCCCAGGCCATCATCTATACTGATGGAGGCACGTGTGGATCTCATCGACCTGGACTTGTGTAACTCGACCCAGTGGTACAATGGGCGCGTTCAGCCAACCAATGTGTGCGCGGGGTATCCTGTAGGCAAGATCGACACCTGCCAG
Seq A exon
GTAACCTTCCTTCTGGCTTCTGGGCCCCTGGGTCCCTCCAGGACTCTCCCGGCCCCTGAGAACATCCTCCTTTTGGATCCCCAAGCTCCACTATCTCCACTGCTCTGCCCAGGGCCCTTCTCTAGTGACTGCTTCCCCGGTCCCTTTTCTAGCACCTACTCTCACAGTGGGGATGAGCGGTGACAGCCACCGGCTGCCCCTGCCATGTGCCCCTGTGGACACGTGGGTTTGCTCATCTCACTGCAAGGAAAGCCCTGACAATTCACACCCTCCTCACATCCCAAATGAAGCCCCTGACACCCCCTCAAACTTTACTACAACCACTTGTGTTTACAGCAGCAGGAGACCATGTCACTGTGGAAATTGTCCTCCCAGAGCCTTCCGACCCCTCTGGGCAGGGGAAGAGTGGCTCAGGCAGATAGTGACCTCTGTGTCCTTCTGGACAG
Seq C2 exon
GGAGACAGCGGCGGGCCTCTCATGTGCAAAGACAGCAAGGAAAGCGCCTATGTGGTCGTGGGAATCACAAGCTGGGGGGTAGGCTGTGCCCGTGCCAAGCGCCCCGGAATCTACACGGCCACCTGGCCCTATCTGAACTGGATCGCCTCCAAGATTGGTTCTAACGCTTTGCGTATGATTCAATCGGCCACCCCTCCACCTCCCACCACTCGACCGCCCCCGATTCGACCCCCCTTCTCCCACCCTATCTCTGCTCACCTTCCTTGGTATTTCCAACCGCCCCCTCGACCACTTCCACCCCGACCACCGGCAGCCCAGCCCCGACCCCCACCTTCACCCCCGCCCCCACCCCCACCTCCAGCCTCACCTTTACCCCCACCCCCACCCCCACCCCCACCTACACCCTCATCTACCACAAAACTTCCCCAAGGACTTTCTTTTGCCAAGCGCCTACAGCAGCTCATAGAGGTCTTGAAGGGGAAGACCTATTCCGACGGAAAGAACCATTATGACATGGAGACCACAGAGCTCCCAGAACTGACCTCGACCTCCTGATCTGACCTGGTTCTCAACAGACCCAGTGAGCCCTTCACTCCTGAGAAAAAGGAAAGATGAAATAAATAAATAAACATATATATATAGATATACACACACACATATCTGTATGTATACATGCATATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100312:ENST00000216139:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.636
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=25.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGTAACTCGACCCAGTGG
R:
ACCAAGGAAGGTGAGCAGAGA
Band lengths:
358-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains