RnoALTA0002390-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197812317-197814808:-
Coord C1 exon
chr2:197814493-197814808
Coord A exon
chr2:197812361-197812411
Coord C2 exon
chr2:197812317-197812360
Length
51 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCATGCTCCTCCCTCCTCAGAGC
3' ss Score
9.91
Exon sequences
Seq C1 exon
CGGAGGCAGCTGGAGAGAGCGGGCGCAGAGAAGGTAGAGCCTCCCTGACCCCCGCCTGGGCTCTGACTGTCTTAGAACAGTAGACCCTGAGGCGAATTCCTGGGGAGGGGGTCTGGTCTCTGGGACTCCAGGTCCCATCACCCGGGCGAGGGCTTGCGCCAAGATTCCTATTAAGTCACATAGTGAAGTTGGAAAACATAACCGGGACCTCCCTACGCGCTGGCGCAGCCGGCTCTTCCCTGAGGGGCTTCGGGAGGATGCGCCCCGACGCCTGCACTCTGGGATCGCAGGGATAGTGTGTCCAGGAGGGATGCGG
Seq A exon
AGCACCCTCCATCCCTGATGCCAGAGTAGCTACCCTGTCCCTTCTCCCCAG
Seq C2 exon
CCCAGGGGCAGTCACAGGAAGAGCATGGAGCTTTGGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385-1-7,1-6,1-5,1-4-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACATAACCGGGACCTCC
R:
TCTTCCTGTGACTGCCCCTG
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]