RnoEX0006941 @ rn6
Exon Skipping
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197812317-197814808:-
Coord C1 exon
chr2:197814776-197814808
Coord A exon
chr2:197814493-197814580
Coord C2 exon
chr2:197812317-197812411
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCCCTACGCGCTGGCGCAGCCG
3' ss Score
3.81
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CGGAGGCAGCTGGAGAGAGCGGGCGCAGAGAAG
Seq A exon
CCGGCTCTTCCCTGAGGGGCTTCGGGAGGATGCGCCCCGACGCCTGCACTCTGGGATCGCAGGGATAGTGTGTCCAGGAGGGATGCGG
Seq C2 exon
AGCACCCTCCATCCCTGATGCCAGAGTAGCTACCCTGTCCCTTCTCCCCAGCCCAGGGGCAGTCACAGGAAGAGCATGGAGCTTTGGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGCAGCTGGAGAGAG
R:
GCTCCATGCTCTTCCTGTGAC
Band lengths:
115-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]