RnoALTA0003574-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049733 | Ankrd33
Description
ankyrin repeat domain 33 [Source:RGD Symbol;Acc:1586880]
Coordinates
chr7:142756617-142757143:+
Coord C1 exon
chr7:142756617-142756781
Coord A exon
chr7:142757014-142757017
Coord C2 exon
chr7:142757018-142757143
Length
4 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
CTAAGCTGCTCTGTCCCCAGACA
3' ss Score
8.2
Exon sequences
Seq C1 exon
ATGACTGAGGCACCGCCCTGTCCAGGCGGCAAGACACCAAGTCCTGGATGCGGTCTGAAGACGCTGTACTGGGCATGTGTCCACAATGACCTCGCTGAGCTCCAAGCCAGGCTGGACGTCGGGGTGTCTCCAGATGAGGCCTCCCAAGTGGACGGCAATGGGAGG
Seq A exon
ACAG
Seq C2 exon
GCCTCATGGTCGCATGCTACCACGGCTATGGTTCCATTGTGGCTCTGCTCAGCGGCTGTCCTTTCCTGGACGTGAACCAGCAGGACAAAGACGGGAACACAGCCCTCATGCTGGCGGCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049733-1-5,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=60.0)
A:
NA
C2:
PF127962=Ank_2=FE(60.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGGTGTCTCCAGATGAG
R:
TGAGCAGAGCCACAATGGAAC
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]