RnoALTA0003612-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000055481 | Ankrd7
Description
ankyrin repeat domain 7 [Source:RGD Symbol;Acc:1564660]
Coordinates
chr4:45568910-45569259:+
Coord C1 exon
chr4:45568910-45569024
Coord A exon
NA
Coord C2 exon
chr4:45569181-45569259
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TACTCTTCTTCCACTAGCAGGCA
3' ss Score
6.27
Exon sequences
Seq C1 exon
AACACCTTTGCATTTCGCCTGTGCTAACGGATATACAAACATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq A exon
NA
Seq C2 exon
GCAGCAGAGTGTCAACAGGAGAGTTGTGCTACTCTTCTTCTACACCATGGTGCAGATCCAAATCTGGGAGATATTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055481-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.9=63.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATAGTGAAAACAGAACCCC
R:
TTTGGATCTGCACCATGGTGT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]