RnoEX0009728 @ rn6
Exon Skipping
Gene
ENSRNOG00000055481 | Ankrd7
Description
ankyrin repeat domain 7 [Source:RGD Symbol;Acc:1564660]
Coordinates
chr4:45567573-45569354:+
Coord C1 exon
chr4:45567573-45567962
Coord A exon
chr4:45568910-45569024
Coord C2 exon
chr4:45569181-45569354
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTGTATCGATATAGAAC
3' ss Score
6.68
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TCCTTGGCTATAGCTAGGCAAAGATTCCTGTGTACACAGAACTCTGGATTTGGTCAGATACAGAAGCAGTCGTGAATGAGGTGCTTGCGGCAGAGGACCTGGGCTGTTGGTTAGGATTCCCAGGAACGTCTTAATTAGAGATCTTACTATGAAGAAGCTCTTCCCCTTCAGGGAAAAGAGGAAGACAGATGATTCTCACAGCCACTCCTCAGACCTGTCCATTAGCCTAGCCAGTACCATGCCCAGCCTGTCCACAGGTGGGGGATATCATCTTCGAGATAAGCCCTTAAAGAAACTCCATAAAGCTGCTTCAGTTGGCAATGTGCAGAAGCTGAAGGATTACCTCGAACGCAAGAAATACGACGTGAATGGGCGGGACAAAAGAAGCAG
Seq A exon
AACACCTTTGCATTTCGCCTGTGCTAACGGATATACAAACATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq C2 exon
GCAGCAGAGTGTCAACAGGAGAGTTGTGCTACTCTTCTTCTACACCATGGTGCAGATCCAAATCTGGGAGATATTTATGGTAATACTGCTCTCCATTATGCTGTTTATGGCCAAAATATCTCATTAGCCAATAAATTGCTTGACTACAAAGCCAATCTTGAAGCCAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055481_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=38.3)
A:
PF127962=Ank_2=FE(40.4=100)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.9=63.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCCTCAGACCTGTCCAT
R:
TTTGGATCTGCACCATGGTGT
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]