MmuEX6003090 @ mm9
Exon Skipping
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18816318-18818417:+
Coord C1 exon
chr6:18816318-18816727
Coord A exon
chr6:18817982-18818096
Coord C2 exon
chr6:18818241-18818417
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTGTATCAATATAGAAC
3' ss Score
6.21
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGATATAGCTGCTTTGGTCCCTGGCTATAGCCAGGCAAAGATTCTTGTCAGCACACAAGTCTAGATTTGGTCAGATCGAGAGGCAATTGTGAACAAGGTGGTTGCGGCAGAGGACCCGGGCTGTTGGTTAGGATTCCCAGGAACATCTTACTTAGAGATCTTACCATGAAGAAGTTCTTCCCCTTCAGGGGAAAGAGGAAGACAGATGATTCCCACAGCCACTCCTCAGAAGTGCCCATTAGCCTGGCCAAAACCGCACCGCCCAGCCTGTCCATAGGTGGAGGATATCACCTTCGAGATAAGCACTTAAAGAAACTTCATAAAGCTGCTACCATTGGCAATGAGCAGAAGCTGAAGGATTACCTTGAACGCAAGAAATACAATGTGAATGGGCGGGACAAAAGAAGCAG
Seq A exon
AACACCTTTGCATTTGGCCTGTGCTAATGGATATACAAATATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq C2 exon
CAGGCAGTAGAGTGTCAACAGGAGAGTTGTGCTACGGTTCTTCTTCTTCATGGTGCAGATCCAAATCTGGTAGATGTTTATAGTAATACGGCTCTCCATTATGCTGTTTGTGGCCAAAATATTTCATTAGCCAATAAATTGCTTCAATATAAAGCCAATCTTGAAGCCAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517-'0-2,'0-1,1-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=37.8)
A:
PF138571=Ank_5=PD(68.5=94.9),PF127962=Ank_2=PU(1.1=2.6)
C2:
PF127962=Ank_2=FE(62.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTCCCACAGCCACTCCT
R:
ACCGTAGCACAACTCTCCTGT
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: