MmuEX6003090 @ mm10
Exon Skipping
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18866318-18868417:+
Coord C1 exon
chr6:18866318-18866727
Coord A exon
chr6:18867982-18868096
Coord C2 exon
chr6:18868244-18868417
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTGTATCAATATAGAAC
3' ss Score
6.21
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGATATAGCTGCTTTGGTCCCTGGCTATAGCCAGGCAAAGATTCTTGTCAGCACACAAGTCTAGATTTGGTCAGATCGAGAGGCAATTGTGAACAAGGTGGTTGCGGCAGAGGACCCGGGCTGTTGGTTAGGATTCCCAGGAACATCTTACTTAGAGATCTTACCATGAAGAAGTTCTTCCCCTTCAGGGGAAAGAGGAAGACAGATGATTCCCACAGCCACTCCTCAGAAGTGCCCATTAGCCTGGCCAAAACCGCACCGCCCAGCCTGTCCATAGGTGGAGGATATCACCTTCGAGATAAGCACTTAAAGAAACTTCATAAAGCTGCTACCATTGGCAATGAGCAGAAGCTGAAGGATTACCTTGAACGCAAGAAATACAATGTGAATGGGCGGGACAAAAGAAGCAG
Seq A exon
AACACCTTTGCATTTGGCCTGTGCTAATGGATATACAAATATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq C2 exon
GCAGTAGAGTGTCAACAGGAGAGTTGTGCTACGGTTCTTCTTCTTCATGGTGCAGATCCAAATCTGGTAGATGTTTATAGTAATACGGCTCTCCATTATGCTGTTTGTGGCCAAAATATTTCATTAGCCAATAAATTGCTTCAATATAAAGCCAATCTTGAAGCCAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517-'0-2,'0-0,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=37.8)
A:
PF138571=Ank_5=PD(68.5=94.9),PF127962=Ank_2=PU(1.1=2.6)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGATTCCCACAGCCAC
R:
ACCGTAGCACAACTCTCCTGT
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types