GgaEX0013380 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24064036-24067629:+
Coord C1 exon
chr1:24064036-24065047
Coord A exon
chr1:24067098-24067212
Coord C2 exon
chr1:24067456-24067629
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTACACATTTAATTTTTAGGAC
3' ss Score
9.9
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CGGACTGCTGTCCCTGCTACTATTACAGCAGCACCAAGCAACGGCACCGAGAGAACGCCGCTGGGCGCCTCCTGGCGCGACCGGCTCTGCGCATGCGCACGCTCCGCTGCTGTCTGCGGGCGCACACCCTCTAGCATCGCTGTGGCTCCGCCTCCCGCTGCGCATGCGCGGGGCTCCCGGCTCTGGGAGGGGGTGTGGGGTCGTTCTGTCTGTGACTTGGGCCGCGCTTTGGCGAGTGTACGGCGGCGTTGCGTGTAGTGCTTGGGGCTCCCCGGCCCGACAGAGTTCTGAGACGACATGAAGAAGATATTCGGCTTCGGAAGGAAGAAGAAAGGGGATCCGCCGCCCGGCAGCACCGCTTCGCCGTGTCCGGCCGGTGCGTACGAGCTCCGCCAGAAGGAGCTGGGCAAGCTGCACCGCGCGGCCGCCGCCGGAGACCTGGCCCAGGTGCGGCAGGGGCTGAAGAAGCACGGCATCGACGGGCGCGACAAGGCGCAGCG
Seq A exon
GACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAGCAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAG
Seq C2 exon
GCAGTACAATGCCAGCAAGAAAAATGTGTGGCAATCCTGCTGGAGCACGGTGCTGATCCGAACTTGGCAGATGCTAACGGCAACACTGCCCTTCACCTGGCTGCTGTAGCTCCTAACACATTTCTAGCAGGGATGTTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.471 A=0.026 C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(31.5=42.6)
A:
PF127962=Ank_2=FE(41.3=100)
C2:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGAAAGGGGATCCGCC
R:
GCATCTGCCAAGTTCGGATCA
Band lengths:
251-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]