BtaEX0000609 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MX15]
Coordinates
chr13:17788337-17793725:+
Coord C1 exon
chr13:17788337-17788656
Coord A exon
chr13:17793279-17793393
Coord C2 exon
chr13:17793552-17793725
Length
115 bp
Sequences
Splice sites
3' ss Seq
AATTGCTCTTGCTTTCCTAGGAC
3' ss Score
10.1
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCTTCCCTGTAGTGCTTGTGTTGGGTTTAGGGGACTGTGAAGAGCCGAGGGGGAGGTGAGGTGTGTTTGGAGCCCATAGGCTCTGCGATGAAGAAGATTTTTGGCTACAGGAGTGAGAAGGGCGAGTCGCCCTTAGACTCCTCCATCAGCCTGGGGAGAGACAGAGGTCATCGTAGAACCAGCTTCCAGCCCGGGTACCACATCCGAGACAGGGACCTCACAAAGATCCACAAAGCTGCCAGCGTAGGCAACGTAGCCGAAGTGCAGCAGGTTCTGTTGCTCAGAAAGAATGGCCTGAATGACAGGGACAAGAAGAACAG
Seq A exon
GACTGCGCTCCATTTGGCCTGTGCCAATGGCCATTCAGCGGTGGTCACTCTCCTCCTGGAGAGAAAATGCCTGCTTAACCTCTGTGACAATGAAAAGAGGACAGCGCTGATGAAG
Seq C2 exon
GCCGTAGAATGCCAAGAGGAGGAGTGTGCGACTCTTCTGCTGGAGCATGGTGCCGACCCAAATGTCATGGACGTCTGTGGCAACACCGCTGTCCACTACGCTGTCTTTTGCCAGAATTTATCACTCGCAGCAAAGCTGCTTTCCTATGACGCCGATATAGAAGCCAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017012_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=39.7)
A:
PF127962=Ank_2=FE(40.4=100)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(51.5=60.3),PF093435=DUF2460=PU(30.8=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGACAGAGGTCATCGT
R:
GCCACAGACGTCCATGACATT
Band lengths:
248-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development