DreEX6100455 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3515375-3518937:-
Coord C1 exon
chr25:3518644-3518937
Coord A exon
chr25:3516103-3516217
Coord C2 exon
chr25:3515375-3515548
Length
115 bp
Sequences
Splice sites
3' ss Seq
TAATGTCTCTTTTCCTGCAGAAC
3' ss Score
10.28
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATTTATTCTTAGAGAATGGGCGAGACATGCGAGGCGATCAGTACCTGAGCCTCAGGTGAACGACAGTCTGCGGATGGAGATGTGCCGTCAGCGACCATGAAGAAGATATTCAACTTTAAGAAGAAGAAGGGCTCCCCGAGCGCCTCTGAGACCGCGAGCGTACTGTCGGCCAGCTACGATGTCAAGGAGAAAGACCTCGGGAAGGTCCACAAGGCTGCGTTCAGCGGAGATGTGGTCAAACTCAGACAGCTGGCCAAAAAGAACGATTTAAACCAGCTGGATAAGGAAAACAG
Seq A exon
AACTGCGCTGCATATCGCTTGTGCCTGTGGACACACGGACGTGGTACAGTACTTGGTGGAGAGCAAAGTGAAGCTCAACTTATGTGACAATCAGAACCGCTCCGCCTTAATGAAG
Seq C2 exon
GCGGTTCAGTGTGAACAAGATCGCTCCGTCTCTTTGCTCCTGGAACACGAGGCCGATCCAAACCTGGTGGACATCAATGGAAACACAGCATTACACCTGTCTGCCCGCATCCCTTCTTTACCCGTAGCACTACAGCTCCTGGAGCACTCAGCCAACATCGACGCACAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(31.5=43.9)
A:
PF127962=Ank_2=FE(41.3=100)
C2:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAGCGACCATGAAGAAG
R:
GTTCCAGGAGCAAAGAGACGG
Band lengths:
255-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]