MmuEX0001766 @ mm9
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23062996-23068353:+
Coord C1 exon
chr2:23062996-23063624
Coord A exon
chr2:23067913-23068027
Coord C2 exon
chr2:23068180-23068353
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCACTGTGATTTCTCTATAGGAA
3' ss Score
9.32
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCTATGACAAGTGATAATATTTGGATAAGGATGAGTGGGCTTATTACATCGTTGATACTTAGATAACGAATAATGGGCTAATTATAAATATTAAAAACAGGAGGGTGGACTTATAATTCGATATGAGATGGGGAGAGTCTGCTTGTTATAATAACGTTGATACTGGGGCAGTTAACGGTTGGTTTGTTATAAATAACCTTGCCTGAGATGGGAGGAAAGTACAGCCGTGGGGAAGAGAGGAGGCCTTTGGGGTTTCCAGGCTTCTCTGCGCTGTGTTGCTGTCAGAAAACAAATAGGGAAGAGACCCCCTTGGGTTTCTGCGATATTAAGGCACGGAGAAGTAACCTGAGCTTTGGAAGGGAGGATCCTGCTTATTTAGACATGGCTTACTTTCCTGACAATGATCTGCACATGGCGGCCTGTGCAGGCGATTTACCTTTTGTGCGGCTGTACTTTACTCTGGGTAAATACGAAGTCAATCACAGAGACAGGGAGAATAG
Seq A exon
GAATGCCATGCACTTTGCCTGCTTCTATGGACATTTAGAATTGGTGATATATCTCTGGAGGCGTGGTTGTGAGATTAATGTGTGTGACAATCATAACATCACACCCCTGATGAAG
Seq C2 exon
GCTGTCCAAAGCTGGGAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTAACACTGCTCTGCACTATGCTGTCTATAGCGGGAATTTAGCAACGGCTGCCAGGCTGCTACAGTACGGAGCAGATATTGAGGAAAGGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.0=31.6)
A:
PF127962=Ank_2=FE(40.4=100)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAGGGAGGATCCTGCTT
R:
GTGCAGAGCAGTGTTACCCAT
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: