HsaEX0004395 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27382278-27389421:-
Coord C1 exon
chr10:27389014-27389421
Coord A exon
chr10:27382614-27382728
Coord C2 exon
chr10:27382278-27382451
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGTCCTGTCACTCTCATAGGAC
3' ss Score
6.24
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTCTAGCGGGATCGCTTGCTTGGTAACCCGGAGGGAGAGATTGGAAACCGCGGAGTTTCCTTTGGGAGGCTGCGGCCAGCCGGGGCTGACTTGTTATGTTGGGCTCCGGAGGCCGTTAAGAGCCGAGAGAGACATGAGGTGTCTCTGAAGCCCGGTCGCCTGGGCCATGAAGAAGATTTTTAGTAAGAAGGGCGAGTCGCCCTTGGGCTCCTTCGCGCGGCGGCAGAGGAGCAGCGCGGGAGGCGGGGGCGAGCCGGGGGAGGGCGCCTACTCGCAGCCCGGCTACCACGTCCGAGACCGAGATCTCGGCAAGATCCACAAAGCTGCCAGCGCGGGTAATGTGGCGAAAGTGCAGCAGATCCTTTTGCTCAGGAAGAATGGCTTGAACGATAGAGACAAGATGAACAG
Seq A exon
GACGGCTCTACATTTGGCCTGTGCCAATGGTCATCCAGAAGTAGTAACTCTCCTGGTGGACAGAAAATGCCAGCTCAATGTCTGTGACAACGAAAACAGGACAGCTCTGATGAAG
Seq C2 exon
GCTGTACAATGCCAGGAAGAGAAATGTGCAACTATTCTGCTAGAACATGGTGCTGATCCAAATCTTGCGGATGTCCATGGCAACACTGCTCTTCACTATGCTGTCTATAATGAGGACATATCAGTAGCAACAAAGCTGCTTTTGTATGATGCAAATATTGAAGCAAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'0-3,'0-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(62.3=40.7),PF0115012=GDA1_CD39=PU(18.9=29.6)
A:
PF136371=Ank_4=PD(35.8=48.7),PF0115012=GDA1_CD39=FE(29.9=100),PF127962=Ank_2=PU(21.6=41.0)
C2:
PF0115012=GDA1_CD39=FE(44.9=100),PF127962=Ank_2=PD(75.7=96.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCAAGATCCACAAAGCT
R:
TGCATCATACAAAAGCAGCTTTGT
Band lengths:
257-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)