HsaEX6010111 @ hg19
Exon Skipping
Gene
ENSG00000106013 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:18588]
Coordinates
chr7:117867986-117874928:+
Coord C1 exon
chr7:117867986-117868045
Coord A exon
chr7:117874485-117874599
Coord C2 exon
chr7:117874755-117874928
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTATTGACATAGAAC
3' ss Score
5.93
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TGTTGTCCAATCTTCTAGATGGCTTTTATCCTACACCACTCCGCTGAATGACTTTATAAG
Seq A exon
AACACCTTTGCACCTAGCCTGTGCTAATGGACATACAGATGTTGTACTTTTCCTAATTGAGCAACAATGCAAAATAAATGTCCGGGATAGTGAAAACAAATCCCCATTGATTAAG
Seq C2 exon
GCAGTACAGTGTCAAAATGAGGATTGTGCTACTATTCTTCTAAACTTTGGTGCAGACCCAGATCTGAGGGATATTCGTTATAATACTGTTCTTCACTATGCTGTTTGTGGTCAAAGTTTGTCATTAGTTGAAAAACTGCTTGAATACGAAGCTGATCTTGAAGCGAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106013-'2-7,'2-6,4-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074556=Psu=FE(22.7=100),PF038638=Phage_mat-A=FE(27.0=100),PF127962=Ank_2=FE(26.0=100)
A:
PF127962=Ank_2=FE(40.4=100)
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(50.0=56.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTCCAATCTTCTAGATGGCT
R:
CTTATTTTTCGCTTCAAGATCAGCT
Band lengths:
234-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)