RnoALTA0007255-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012932 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr4:10391291-10392362:+
Coord C1 exon
chr4:10391291-10391386
Coord A exon
chr4:10392192-10392193
Coord C2 exon
chr4:10392194-10392362
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
3' ss Seq
CACCCTGTGCTTTTCAAAAGAGA
3' ss Score
4.67
Exon sequences
Seq C1 exon
ATGGAAGCTATCCCCAAAGAAGACCTTTTATTGCCTGAGCAAAGGAAGGAGCTCCACAAAGAGGTTGACCTGGCTAAGAGAAATCTGGCTCAGCAG
Seq A exon
AG
Seq C2 exon
ATCTCTGTCAGAAGCCGAGGCCAAGTTAGTCGAGCAGCAGATTGCGGAGGAAAACAAGCTTTTAAAGGAGCAAGAAACTATGCGTGAGGTGCTGTTCAACCTCGGGCGAATGACTCAGATCAAAATGGAAGAGAAAGAACAAAAGGCTAAGGACTTCCTGAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012932-26-36,26-35-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAAGGAAGGAGCTCCAC
R:
CGCAATCTGCTGCTCGACTAA
Band lengths:
106-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]