RnoEX0017637 @ rn6
Exon Skipping
Gene
ENSRNOG00000012932 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr4:10373997-10392362:+
Coord C1 exon
chr4:10373997-10374183
Coord A exon
chr4:10391291-10391386
Coord C2 exon
chr4:10392192-10392362
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATGTTGATTTCCAGATG
3' ss Score
8.71
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
AGGGATCTTGGATATCAATCTACGAAACTGCCTCATGGACAAGCAGAATTACCATGATGAACTTTCTCGTAAGCAACGAGAGAAAGAACGAGATTTTCGGAATCTGAAGAAGACAGAGCTGCTCCTGAAAGTGTCCTTGGATGCGCTCTCTCAGGCTCAAGCCTTGAATCAGAGGCTTCTACTAGAG
Seq A exon
ATGGAAGCTATCCCCAAAGAAGACCTTTTATTGCCTGAGCAAAGGAAGGAGCTCCACAAAGAGGTTGACCTGGCTAAGAGAAATCTGGCTCAGCAG
Seq C2 exon
AGATCTCTGTCAGAAGCCGAGGCCAAGTTAGTCGAGCAGCAGATTGCGGAGGAAAACAAGCTTTTAAAGGAGCAAGAAACTATGCGTGAGGTGCTGTTCAACCTCGGGCGAATGACTCAGATCAAAATGGAAGAGAAAGAACAAAAGGCTAAGGACTTCCTGAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012932-'24-35,'24-34,26-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.031 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000017374fB2500
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCTCCTGAAAGTGTCC
R:
GAACAGCACCTCACGCATAGT
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]