RnoEX0017636 @ rn6
Exon Skipping
Gene
ENSRNOG00000012932 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr4:10373997-10391386:+
Coord C1 exon
chr4:10373997-10374183
Coord A exon
chr4:10389946-10390023
Coord C2 exon
chr4:10391291-10391386
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCATTGTTTTCTAAGATT
3' ss Score
6.8
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
AGGGATCTTGGATATCAATCTACGAAACTGCCTCATGGACAAGCAGAATTACCATGATGAACTTTCTCGTAAGCAACGAGAGAAAGAACGAGATTTTCGGAATCTGAAGAAGACAGAGCTGCTCCTGAAAGTGTCCTTGGATGCGCTCTCTCAGGCTCAAGCCTTGAATCAGAGGCTTCTACTAGAG
Seq A exon
ATTTCCTGGTCCCGGGTAGCACTCAAGGCCATGACCTGTGGCCTGAGGGAGGAGAGCATGGAGAACAGCCCATCCTAG
Seq C2 exon
ATGGAAGCTATCCCCAAAGAAGACCTTTTATTGCCTGAGCAAAGGAAGGAGCTCCACAAAGAGGTTGACCTGGCTAAGAGAAATCTGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012932-'24-34,'24-33,25-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.360 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000017374fB2500
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACAGAGCTGCTCCTGA
R:
GCCAGATTTCTCTTAGCCAGGT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]