GgaEX1001978 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12550363-12554334:-
Coord C1 exon
chr1:12554148-12554334
Coord A exon
chr1:12552045-12552140
Coord C2 exon
chr1:12550363-12550533
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCCTGGTTTGTTTTTGTAGGCA
3' ss Score
8.52
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
AGACTCTCTGAACCAAAAGTTAAATGAACGAATCTTTGAGAAAAAACAACAGCAGGAAACTCTCATTTACATGCAAGGAGAGAAAGATAAAGAACTGAGGAATCTGAAAAAGATGGAGCTACAGATGAAAATGATTCATGAGTCCTTGCAACAAGAGAAGTCACAGCACAAAACACTCAAATTGGAG
Seq A exon
GCAGAAGCCATCCCTAAAATTAATGGAGTATTACTAGAAAGAAGACGAGAACTGCAGAAGGAAATAGAAATGAAAAAGAGATGTTTAGCTGAACAG
Seq C2 exon
GAGATGGTATCGGATACGGACGCCCGCAGGTTAGAGGAATGTATTGCTGAAGAAGGCCGGCTGTTCAAGGAGCAGGAGAAATGCCGCAGTGAGTTATCCAGACTTGCACATCTGACGTGGCTCAAAGTTGAAGAGAAGGAACAGAAATCCAGGGAAGTTCAGAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'14-17,'14-15,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAAGAGAAGTCACAGCA
R:
TTTGAGCCACGTCAGATGTGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]