DreEX0019422 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20467811-20469387:+
Coord C1 exon
chr4:20467811-20467997
Coord A exon
chr4:20468786-20468878
Coord C2 exon
chr4:20469217-20469387
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTCATTTTACCACAGAAA
3' ss Score
6.65
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GGGTCTGTTGGAAATTAGCATGGAGCAGATTGTTGCTGAGTTCATATCTTTGCGCGATAAACTGGCCCGAGATACAAGGCTGAAAGACAAGCTTATGTTAGCCCTGAAGAGAAATGAACTGCAGCTGAAACAGGCCAGAGACGCTCTCACTAACACTCAACAACAGCATGAGAGGATCCAGGCTCAG
Seq A exon
AAAGAGACAGTCTCAGAAGCCGACATCTTGCTTGAGAGAAGAAAAGATCTGGAAAAGGAAGTAGAAAACTTAAAACGCAATTTGATTAGTGAG
Seq C2 exon
CAGTCTATGGCAGGGATGAAGGTCCAGCTGGTTCAAGAGTATGTTGAGAAGGAGCAGGCTTTGATTAGAGAGTCTTATCGCCGCAGAGATGAGCTTCATCACCTTCATCATCTCATACTTATCAAAACAGACGAAAAAGAGCAGAAGAGCCGTGAGCTACTGAAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794_MULTIEX1-6/9=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCGCGATAAACTGGCC
R:
ACTCTTGAACCAGCTGGACCT
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]