GgaEX1001978 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13705850-13709821:-
Coord C1 exon
chr1:13709635-13709821
Coord A exon
chr1:13707532-13707627
Coord C2 exon
chr1:13705850-13706020
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCCTGGTTTGTTTTTGTAGGCA
3' ss Score
8.52
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
AGACTCTCTGAACCAAAAGTTAAATGAACGAATCTTTGAGAAAAAACAACAGCAGGAAACTCTCATTTACATGCAAGGAGAGAAAGATAAAGAACTGAGGAATCTGAAAAAGATGGAGCTACAGATGAAAATGATTCATGAGTCCTTGCAACAAGAGAAGTCACAGCACAAAACACTCAAATTGGAG
Seq A exon
GCAGAAGCCATCCCTAAAATTAATGGAGTATTACTAGAAAGAAGACGAGAACTGCAGAAGGAAATAGAAATGAAAAAGAGATGTTTAGCTGAACAG
Seq C2 exon
GAGATGGTATCGGATACGGACGCCCGCAGGTTAGAGGAATGTATTGCTGAAGAAGGCCGGCTGTTCAAGGAGCAGGAGAAATGCCGCAGTGAGTTATCCAGACTTGCACATCTGACGTGGCTCAAAGTTGAAGAGAAGGAACAGAAATCCAGGGAAGTTCAGAAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAAGAGAAGTCACAGCA
R:
TTTGAGCCACGTCAGATGTGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]