MmuEX6016096 @ mm9
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:20814431-20822790:-
Coord C1 exon
chr5:20822604-20822790
Coord A exon
chr5:20815411-20815506
Coord C2 exon
chr5:20814431-20814601
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTTTGATTTCCAGATG
3' ss Score
9.58
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
AGGGATCTTGGATATCAATCTACGGAACTGTCTCATCGACAAGCAGAACTACCATGATGAACTTTCTCGTAAGCAAAGAGAGAAAGAACGAGATTTTCGGAATCTGAAGAAGACAGAGCTGCTCCTGAAAGTGTCTTTGGATGCGCTCACTCAGGCACAAGCCATGAATCAAAGGCTTCTACTAGAG
Seq A exon
ATGGAAGCTATCCCAAAAGAATACCTTACATTGCCTGAACGAAGGAAAGAGCTCCACAAAGAGGTTGATCTAGCTAGGAGAAATCTGGCTCAACAG
Seq C2 exon
AAATCTCTGTCAGAAGCTGAGGCCAAGTTAGTGGAGCAGCAGATTGCACAGGAGAACAAACTTCTAAAGGAGCAAGAAAGTTTGCGGGAGCTGGTGTTCAACCTCGGGCGAATGACTCAGATCAAAATAGATGAGAAAGAACAAAAGGCTAAGGATTTCCTGAAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGGATGCGCTCACTCA
R:
TGATCTGAGTCATTCGCCCGA
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: