BtaEX6026941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44169343-44184035:-
Coord C1 exon
chr4:44183843-44184035
Coord A exon
chr4:44170410-44170505
Coord C2 exon
chr4:44169343-44169513
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTCTGATTTCCAGATT
3' ss Score
7.8
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
GAACAGAGGGATCTTGGATCTCAATTTACGAAACTGTCTTATTGACAAGCATAACTACCACGATGAACTTTCTCGTAAGCAGAGAGAGAAAGAACGAGATTTTCGAAATTTAAAAAAAATGGAGCTACTCTTGAAAGTGTCCTGGGATGCACTCAATCAAACTCAAGCACTGCATCAGAGGCTTCTGTTAGAG
Seq A exon
ATTGAAGCTATTCCTAAAGATGATTCTACATTATCTGAGAGAAGGCGAGAACTCCATAAGGAAGTTGAAGTAGCTAAGAGGAATTTAACCCAGCAG
Seq C2 exon
AAAATCCTATCAGAAGCTGAGTCTAAGTTAGTAGAACAGCAACTTGCTGAGGAAAACAAGCTTTTAAAGGAGCAAGAAAACATTCAAGAACTGCTTTTCAACCTTGTCCGTATGACTCAAATCAAAATTGATGAGAAGGAGCAAAAATCCAAGGATTTCCTGAAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCCTGGGATGCACTCAA
R:
ACGGACAAGGTTGAAAAGCAGT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]