HsaEX0013063 @ hg19
Exon Skipping
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76891438-76903969:+
Coord C1 exon
chr7:76891438-76891624
Coord A exon
chr7:76903011-76903106
Coord C2 exon
chr7:76903799-76903969
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTTTGATTTCCAGATG
3' ss Score
9.58
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
AGGGATCTTGGATCTCAATTTACGCAACAGTCTCATTGACAAGCAGAACTACCATGATGAACTTTCTCGTAAGCAAAGAGAGAAAGAACGAGATTTTCGAAATTTAAGAAAGATGGAACTGCTCTTGAAAGTGTCCTGGGATGCACTTAGGCAAACTCAAGCACTGCATCAAAGGCTTCTATTAGAG
Seq A exon
ATGGAAGCTATCCCCAAAGATGATTCTACATTATCTGAGAGAAGGCGAGAGCTTCACAAGGAAGTTGAAGTAGCTAAGAGGAATTTGGCCCAACAG
Seq C2 exon
AAAATTATATCAGAAATGGAGTCTAAGTTAGTAGAACAACAACTTGCAGAAGAAAACAAGCTTTTAAAGGAGCAAGAAAACATGAAAGAGCTAGTAGTCAACCTTCTCCGCATGACTCAAATCAAAATTGATGAAAAGGAACAAAAGTCCAAGGATTTCCTGAAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.312 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGATGCACTTAGGCAAA
R:
GTCATGCGGAGAAGGTTGACT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)